LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele23g1793	ATGGATAATTTCACCTCTTCCTCTTCTCTTCCTCGTCCTACTCCACCTCTATACGACATTCTCCCCACATCGGCTTCATCCTCTTCTGCAGCTTACGACGACGGTTCCGAGGACTCCTGCAGTATTTGTCTAGAGCCCTTCAGCACCGATGACCCTGCTACTATAACAAGTTGCAAACATGAATATCATCTGCATTGTATTCTTGAATGGTCCCAGAGAAGCAAAGAGTGCCCAATCTGTTGGCAGATACTTGTCTTGAAAGACCCTGCCAACCAAGAACTTCTAGCTGCAGTGGAAGCTGAAAAACTCATAAGGTCAAGAAGCTCGTATTCATCTGCATTCCCATATCCTCGTATCCCCATTGAACAGCATAGTGCGGAACATGATGGTTCTTGTTCATATGACTCTGATTTTGATGAACAAATTATGCAGCACCTAGTTGCTACTGCAAGTAGAGCACATTATTTTCGTAGAAGGGAAATGCAAAGATCATCTGGTGTGGGTCCATCTCGGATTCCTGTAGTTGACTCTTCATTGCATGTCTCTGGGCTGCAACCGGTGCATACAACTTCACCTTCTGGAGGTAGTTCACCTAATTCCTGTTCTGCTGCAGATGTTCAACCTCCACCGTCTGCCCCTTCCTCTGTTGAAGCAATTACAAGAAATTCCACTCCTGAAACTGATGACCCTTTCAAAGCCAGAGTTCTTTATAGCCAGCCACCATCTGAGAGTGCGAGAAGACTGAACACTTCTGAGATGTTTACCTTCCCCGAGTCCATCAAGACCAAATTTTCCGCTGCTTCAGCTAGATATAAAGAATCTATTTCAAAAAGTACACGTGACCTTAAAGAGAAGTTACTTGCTCGTAATGCCTCAGTAAAAGAGTTGAGTAAAGGTGTTCAGCGTGAGATGAATGCTGGCATTGCTGGTGTTGCCCGGATGATTGAACGCCTTGAGCTCGCCTCAAAACGGGCTACTGCTTCTCATCCTATGCCTAGCTCTACCGAGGGAACTTCTGGCTTCCACTCTAAAGGAAAGACTGTGCAAGAAAATGGTAGTGGACAGTCTCTTCTCTCTGCTGTTAAGGAAGAGAGTGGGGTTGTGATTCATGATGTTAGATCAGGTCCACCTGCACAGGTTTCCAGCACGGCTGTCAGTCCAGTAGAATATCCTCATCCACATGTTCAGAGTGGACGGGATGCGGTAAAGACTTAG	1215	0.4601	MDNFTSSSSLPRPTPPLYDILPTSASSSSAAYDDGSEDSCSICLEPFSTDDPATITSCKHEYHLHCILEWSQRSKECPICWQILVLKDPANQELLAAVEAEKLIRSRSSYSSAFPYPRIPIEQHSAEHDGSCSYDSDFDEQIMQHLVATASRAHYFRRREMQRSSGVGPSRIPVVDSSLHVSGLQPVHTTSPSGGSSPNSCSAADVQPPPSAPSSVEAITRNSTPETDDPFKARVLYSQPPSESARRLNTSEMFTFPESIKTKFSAASARYKESISKSTRDLKEKLLARNASVKELSKGVQREMNAGIAGVARMIERLELASKRATASHPMPSSTEGTSGFHSKGKTVQENGSGQSLLSAVKEESGVVIHDVRSGPPAQVSSTAVSPVEYPHPHVQSGRDAVKT	404

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele23g1793	404	FunFam	E3 ubiquitin-protein ligase RHF1A	25	92	-	-
	Lele23g1793	404	MobiDBLite	consensus disorder prediction	184	232	-	-
	Lele23g1793	404	ProSiteProfiles	Zinc finger RING-type profile.	40	80	IPR001841	-
	Lele23g1793	404	MobiDBLite	consensus disorder prediction	1	32	-	-
	Lele23g1793	404	Pfam	Ring finger domain	38	80	IPR001841	-
	Lele23g1793	404	MobiDBLite	consensus disorder prediction	372	404	-	-
	Lele23g1793	404	PANTHER	ZINC FINGER, RING/FYVE/PHD-TYPE	27	89	-	-
	Lele23g1793	404	SMART	ring_2	40	80	IPR001841	-
	Lele23g1793	404	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	24	96	IPR013083	-
	Lele23g1793	404	MobiDBLite	consensus disorder prediction	327	355	-	-
	Lele23g1793	404	MobiDBLite	consensus disorder prediction	324	355	-	-
	Lele23g1793	404	MobiDBLite	consensus disorder prediction	184	226	-	-
	Lele23g1793	404	SUPERFAMILY	RING/U-box	33	87	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele23g1793	Lele-ChrLele23	21473746	21476856	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele23g1793	34	91	C3H Transcription Factor Family	AT4G00335	46.552	1.55e-13	67.0