Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele23g1792 ATGGACGCCCTCTCACCTGCACAGCTTCTTCCCATTTCCTTTGAGAAGCCAACTCCTACTTGTTTTCTTTCTCACTCACAGAATCATACCTTCAATTTTTTCTTTTCCATGTATCACACCAACCCTGGTCTCCGCTTTATCTCCAAGTTCAGAACTCCACATTCCGTTTTAAATACGTCTTCCTTGGCAAACGGAGCAGTTGATAAAGTTGTTCCTCCTACGTTAAGGGAAATATTAGAAGCCCATGTTCCCCAGCATATATTAGACAGGATGGAAGAGATTGGATATGTCATGCCAACAGATGTCCAGAGGCAAGCATTGCCTTCTCTTTTATCTGGTCGCGATGGCATACTTCATGCTCAGACAGGTTCTGGGAAGACACTTGCATACCTACTTCTGATATATTCCGTCATAAACACTGCAAAATCTGCTGTGCAAGCTCTTGTTGTGGTGCCCACCCGTGAACTTGGCATGCAAGTTGCTAAAGTTGCTAGGATGTTGGCTGCAAGTCCGACGGAGGTTGAGGAGGAGCACAAGTCATGTACCGTCATGGCTCTTTTAGATGGAGGAACATTGAGAAGACACAAGAGTTGGCTAAAGGCAGAGCCTCCGATGATAGTGGTAGCAACAGTGGGGAGTTTATGCCACATAATTGAAAGACAATTTTTAAAGCTTGAAACTGTGCGGGTGTTAGTGGTTGATGAGGTTGACTTTATTTTCAATACTTCAAAGCAAGTCAGTTCCCTTCGAAAGCTTTTAACTTTGTATTCGTCATGCAATAACCGTCAAACGGTTTTTGCCAGTGCATCTATACCACAACACAGACGATTTCTTCATGATTGTGTGCAGCAGAAATGGACTAAGAGCGATGTGGTCCATATTCATGTCAGCCCAGTTGAGCCCATGCCATCACGCTTGCATCATAGATTTGTAGTATGTCATAAGAACAAGAAGCAACAAACCCTGTTATCTTTGATACAATCTGATGCACCTGAGTCTGGCATTATATTTGCCAGTGAGCAGTCTAAGAGGTCAAAGCAGGCAGGAAATGCTCCATCAACGTCCCTTCTGATTGACTTTCTGAAGACTTCATATCAAGGTTCTTTAGATATCCTCCTCCTTGAGGAAGACATGAATTTCAATTCTCGAGCAGTTTCACTGTTGGAGATAAGGAAAGGTGGCGGCTATCTTCTTGTAGCAACAGATATAGCTTCGAGAGGAGTTGACTTTCCAGAAATGTCTCACATTTACAACTTCGATCTGCCTAAGACTGCCGTAGATTATCTTCATCGGGCAGGTAGGACTTGTAGGAAACCTTTTTCTGACATGAAATGTACTGTTACCACTATCATCGTTCCAGAGGAGCGGTTTGTTCTCCAGAAGTATGAAAATGAGTTAATGTTCAATTGTGAAGAGCTTACTTTATAA 1428 0.4293 MDALSPAQLLPISFEKPTPTCFLSHSQNHTFNFFFSMYHTNPGLRFISKFRTPHSVLNTSSLANGAVDKVVPPTLREILEAHVPQHILDRMEEIGYVMPTDVQRQALPSLLSGRDGILHAQTGSGKTLAYLLLIYSVINTAKSAVQALVVVPTRELGMQVAKVARMLAASPTEVEEEHKSCTVMALLDGGTLRRHKSWLKAEPPMIVVATVGSLCHIIERQFLKLETVRVLVVDEVDFIFNTSKQVSSLRKLLTLYSSCNNRQTVFASASIPQHRRFLHDCVQQKWTKSDVVHIHVSPVEPMPSRLHHRFVVCHKNKKQQTLLSLIQSDAPESGIIFASEQSKRSKQAGNAPSTSLLIDFLKTSYQGSLDILLLEEDMNFNSRAVSLLEIRKGGGYLLVATDIASRGVDFPEMSHIYNFDLPKTAVDYLHRAGRTCRKPFSDMKCTVTTIIVPEERFVLQKYENELMFNCEELTL 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele23g1792 475 Pfam Helicase conserved C-terminal domain 318 437 IPR001650 -
Lele23g1792 475 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 107 289 IPR014001 -
Lele23g1792 475 SMART ultradead3 95 309 IPR014001 -
Lele23g1792 475 Pfam DEAD/DEAH box helicase 100 273 IPR011545 GO:0003676|GO:0005524
Lele23g1792 475 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 318 475 IPR001650 -
Lele23g1792 475 CDD DEADc 87 282 - -
Lele23g1792 475 Gene3D - 51 286 IPR027417 -
Lele23g1792 475 SMART helicmild6 355 439 IPR001650 -
Lele23g1792 475 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 108 442 IPR027417 -
Lele23g1792 475 CDD SF2_C_DEAD 306 437 - -
Lele23g1792 475 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 47, MITOCHONDRIAL 77 466 - -
Lele23g1792 475 Gene3D - 302 473 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele23g1792 Lele-ChrLele23 21467879 21471069 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele23g1792 85 458 Eukaryotic Initiation Factors Gene Family AT3G13920 26.371 2.50e-28 114
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele21g0260 21 1707277 1710462 Lele23g1792 23 21467879 21471069 hybridization
Lele22g0272 22 1628769 1632280 Lele23g1792 23 21467879 21471069 hybridization