Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele23g1785 ATGGCTCAGCTGCAGAGCGAACAGCAGCAGCAGCCACCCATTGATCATGCCCAGAAGACCAAGACTCTCATTTGTGCTCTCAACCTTGTCTCCCGTAACCTCCCTCTGCCTCCTGATATTTTCAACACCGTTTCCTCCATCTATCACGGCGTAGAAGATGCTTCCAGTGATGACGATGAATGCGAGGTCCCTGATGGGAGTGGAGGTGGAACCGGATCTGAGGAGAAACAGGTGGATGCCCATGCTGACAAGGTTTTGGATAATACAGGAAATTCTAGAGAAGATTTGTTGACGGATCTTGAAGATGCACTAGTGAAACAACGACCAAGTTGTGTGTCAGGTTACAAATTGAAGGAAGAAAGGGAAAGCCGTTATGAAAGTCAGATTCAACATCGGTTAAATGAACTAGAAGGATTACCTTCAAGCAGGGGAGAGGACCTGCAAGCAAAGTGCCTGCTTGAACTGTATGGACTGAAGCTAGCAGAGTTGCAGAGGAAGGTTCGATCTGATGTGAGTGCTGAACACTGGCTCAATGTTAAATGTGCATATCCTGACAGGCAGTTGTTTGATTGGGGAATGATGAGGTTACGTCGTCCTATGTATGGTGTTGGAGATCCATTTGCCATGGATGCTGATGATCAGTTAAGGAAGAAAAGGGATGCTGAGAGATTGTCAAAATTAGAAGAGGAGGAAAAGAATCAAATAGAGACCAGAAAAAGAAAATTTTTTGCGGAAATACTTAATGCTGTCCGTGAGTTCCAATTACAAATTCAAGCTTCTTTGAAACGAAGAAAACAGAGAAATGATGGTGTCCAGGCATGGCATGGAAGGCAAAGACAACGTGCAACACGGGCTGAGAAATTGAGGTTTCAAGCCTTAAAGGCTGATGATCAAGAAGCTTATATGAGAATGGTCAAAGAGAGTAAGAATGAAAGATTGACTTTGCTTCTTGAAGAAACAAATAAGTTGCTCGTAAATTTGGGAGCAGCTGTTCAACGTCAAAAGGACTCAAAACAAACAGATGGCATTGAACCTTTGGAAGACTCAGAAGCTGAACTACCAGAGTCAGATGGTTCAAAGAATGGAATATCCAAGGAATCACCTCCTGAGGAATATGATATGGTAGACTCTGATCACAATGACGACACTAGTGATTTACTTGAAGGTCAACGGCAATACAACTCTGCCATACATTCGATTCAAGAAAAGGTAACTGAGCAACCTTCTATTCTTCAAGGTGGAGAGTTAAGATCATATCAGTTAGAAGGGCTTCAGTGGATGCTTTCTTTGTTCAATAACAACCTAAATGGAATTTTGGCGGATGAAATGGGGCTTGGTAAGACAATACAAACAATTTCGTTGATAGCATATCTTATGGAGAACAAGGGTGTGACTGGTCCCCATTTGATTGTGGCTCCAAAGGCTGTTCTGCCAAATTGGATCAATGAATTCTCGACATGGGTTCCAAGCATTACAACTGTTCTTTATGATGGACGGCTGGATGAGCGAAAAGCAATGAAAGAGGAGTTGTCAGGAGAGGGGAAGTTCAATGTTCTGATAACACACTATGATCTTATAATGAGAGATAAGGCGTTTCTCAAGAAAATTCCCTGGTACTACTTGATTGTGGATGAAGGGCATCGGTTGAAGAATCATGAGTGTGCTCTAGCAAGAACTCTGGACTCTGGCTATAACATCCAACGTAGACTCCTGCTGACTGGCACCCCTATTCAGAACAGTTTGCAGGAATTGTGGTCCCTTCTTAATTTTCTCCTTCCAAGCATTTTTAACTCAGTTCAAAATTTTGAAGACTGGTTTAATGCCCCCTTTGCGGACCGAGTTGATGTCTCTCTAACAGATGAAGAACAGCTATTGATCATTCGCCGTCTTCATCAAGTAATAAGACCCTTCATATTAAGAAGGAAGAAAGATGAGGTGGAAAAATATCTTCCAGGGAAATCTCAGGTCATACTCAAATGTGATATGTCATCATGGCAGAAAGTATATTATCAACAAGTTACTGACTTGGGCAGAGTTGGCTTGGACAACGGCACTGGGAAATCCAAGAGTCTGCAGAATTTAACAATGCAGCTCAGAAAGTGTTGTAACCATCCCTACCTCTTTGTGGGAGAACATAATATGTGGAACAAGGATGAGGTTGTCCGAGCATCAGGGAAGTTTGAACTCCTTGACCGTTTGCTACCAAAACTTCGTAGAACTGGGCACAGAGTCCTTATGTTCTCACAAATGACCCGTCTCATGGATATTCTTGAAATTTATCTGCGGCTTCATGATTTCAAGTTTCTTAGACTTGATGGCTCAACAAAAACTGAGGAAAGAGGGACTCTACTGCGACAGTTCAATGCTCCTGACTCTCCATACTTTATGTTTCTTTTGAGCACCCGCGCTGGAGGCCTTGGTCTAAATTTGCAAACAGCAGATACTGTTATAATTTTTGATAGTGATTGGAACCCTCAAATGGATCAACAAGCTGAGGATCGAGCTCATCGCATTGGACAAAAAAAAGAAGTTAGGGTTTTCGTGTTGGTTAGTGTGGGATCAATTGAAGAGGTGATTTTGGAGCGTGCAAAACAAAAGATGGGCATTGATGCTAAAGTCATCCAGGCGGGACTTTTTAACACAACTTCAACAGCTCAGGACAGGAGAGAAATGTTGGAGGAGATTATGCGCAGAGGCACAAGATCACTTGGGACTGATGTACCAAGTGAGAGAGAAATCAACCGCCTTGCAGCTCGATCAGATGAAGAATTTTGGTTGTTTGAGAGAATGGATGAAGAGAGAAGGCAAAAGGAGAACTACAGATCTCGTCTCATGGAAGAACATGAAGTGCCAGAATGGGTATACTCTGCAGCAGCTAGCAAGGATGACAAGGTCAAAAGTTCTGATTTTGGTAGTGTTACTGGAAAGCGGAAAAGAAAAGAAGTGGTATATGCTGATACTTTAAGTGATCTACAATGGATGAAAGCTGTGGAGAATGGGGAAGACGTGTCAAAGTTTTCAGTTAAAGGGAGAAGAAGAGACCACCTGCCATCAGACAGTAACACAGCCAGTGATAATATCGAGGCAGAAGAAAGTTTATCTGAATTACAAAATGAAAGCTTCTCCATGGCGAAAGAGAGATCGAGTGAAGACTCTTTCCATGTGACCCCTGGTCCTGCCCCAAAAAGACTCAGGCTTGAAGGAATAAACGCACAGAAGCATGAATACGAGGACGCCAGAGGAAGTGGTTTGAATGAGCATATTGTTTCCTGGAATACCCATAGAAAGAAAAGATCAAGCAGTCTTACGCAGAGCTCATCATTTTCTGATTCTAGAGGGCGGAGTTCTAATGGAAGAGCAAATTGGAGCTGA 3372 0.4276 MAQLQSEQQQQPPIDHAQKTKTLICALNLVSRNLPLPPDIFNTVSSIYHGVEDASSDDDECEVPDGSGGGTGSEEKQVDAHADKVLDNTGNSREDLLTDLEDALVKQRPSCVSGYKLKEERESRYESQIQHRLNELEGLPSSRGEDLQAKCLLELYGLKLAELQRKVRSDVSAEHWLNVKCAYPDRQLFDWGMMRLRRPMYGVGDPFAMDADDQLRKKRDAERLSKLEEEEKNQIETRKRKFFAEILNAVREFQLQIQASLKRRKQRNDGVQAWHGRQRQRATRAEKLRFQALKADDQEAYMRMVKESKNERLTLLLEETNKLLVNLGAAVQRQKDSKQTDGIEPLEDSEAELPESDGSKNGISKESPPEEYDMVDSDHNDDTSDLLEGQRQYNSAIHSIQEKVTEQPSILQGGELRSYQLEGLQWMLSLFNNNLNGILADEMGLGKTIQTISLIAYLMENKGVTGPHLIVAPKAVLPNWINEFSTWVPSITTVLYDGRLDERKAMKEELSGEGKFNVLITHYDLIMRDKAFLKKIPWYYLIVDEGHRLKNHECALARTLDSGYNIQRRLLLTGTPIQNSLQELWSLLNFLLPSIFNSVQNFEDWFNAPFADRVDVSLTDEEQLLIIRRLHQVIRPFILRRKKDEVEKYLPGKSQVILKCDMSSWQKVYYQQVTDLGRVGLDNGTGKSKSLQNLTMQLRKCCNHPYLFVGEHNMWNKDEVVRASGKFELLDRLLPKLRRTGHRVLMFSQMTRLMDILEIYLRLHDFKFLRLDGSTKTEERGTLLRQFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMGIDAKVIQAGLFNTTSTAQDRREMLEEIMRRGTRSLGTDVPSEREINRLAARSDEEFWLFERMDEERRQKENYRSRLMEEHEVPEWVYSAAASKDDKVKSSDFGSVTGKRKRKEVVYADTLSDLQWMKAVENGEDVSKFSVKGRRRDHLPSDSNTASDNIEAEESLSELQNESFSMAKERSSEDSFHVTPGPAPKRLRLEGINAQKHEYEDARGSGLNEHIVSWNTHRKKRSSSLTQSSSFSDSRGRSSNGRANWS 1123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele23g1785 1123 FunFam Probable ATP-dependent DNA helicase CHR12 647 945 - -
Lele23g1785 1123 Pfam Snf2-ATP coupling, chromatin remodelling complex 928 994 IPR029295 GO:0042393
Lele23g1785 1123 Gene3D - 384 640 IPR038718 -
Lele23g1785 1123 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 643 893 IPR027417 -
Lele23g1785 1123 CDD SF2_C_SNF 717 850 - -
Lele23g1785 1123 PANTHER SNF2/RAD54 HELICASE FAMILY 209 1030 - -
Lele23g1785 1123 MobiDBLite consensus disorder prediction 364 386 - -
Lele23g1785 1123 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 391 641 IPR027417 -
Lele23g1785 1123 Pfam SNF2-related domain 419 707 IPR000330 GO:0005524|GO:0140658
Lele23g1785 1123 MobiDBLite consensus disorder prediction 1010 1123 - -
Lele23g1785 1123 MobiDBLite consensus disorder prediction 52 79 - -
Lele23g1785 1123 SMART SnAC_2 932 994 IPR029295 GO:0042393
Lele23g1785 1123 Coils Coil 211 241 - -
Lele23g1785 1123 Coils Coil 930 950 - -
Lele23g1785 1123 Pfam Helicase conserved C-terminal domain 726 839 IPR001650 -
Lele23g1785 1123 SMART ultradead3 412 605 IPR014001 -
Lele23g1785 1123 MobiDBLite consensus disorder prediction 334 386 - -
Lele23g1785 1123 MobiDBLite consensus disorder prediction 1095 1123 - -
Lele23g1785 1123 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 729 896 IPR001650 -
Lele23g1785 1123 MobiDBLite consensus disorder prediction 1020 1043 - -
Lele23g1785 1123 MobiDBLite consensus disorder prediction 266 285 - -
Lele23g1785 1123 FunFam Chromatin structure-remodeling complex protein SYD 407 650 - -
Lele23g1785 1123 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 428 594 IPR014001 -
Lele23g1785 1123 SMART helicmild6 755 839 IPR001650 -
Lele23g1785 1123 MobiDBLite consensus disorder prediction 1067 1082 - -
Lele23g1785 1123 Gene3D - 647 946 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele23g1785 Lele-ChrLele23 21405273 21413572 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele23g1785 722 867 RAD5 or RAD16-like Gene Family AT5G43530 38.000 9.96e-22 100
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Lele23g1785 SNF2_N 3.6e-68 CL0023