Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele23g1780 ATGTTGTCTAATCATTTTCAAAACGGCATCGAAACGGCGAAGCTTGCTTGGTCGCGGATTCCGAACTCGGAAGATTTGCTGTACCTCGATGATGCTGTTGGCCTCTTGAAGAAGAGCGATGGAAGCGGCGTTGAGAGTCTTGACTACGAAGTCATAGAGAATTATGCTTACCGAGAAGAACAGGCGCAAAGAGGGAAGCTATACGTGAGCTACTTACTGGTGGTGAAATGGTTATTTGCCTTGCTCATTGGCATCGGTACTGGACTTGCTGCCGTTTTCATTAATATTTCTGTTGAGAACTTTGCTGGCTGGAAGTACTCATTGACATTTAATATAATTCAAAAATCGTATGTGGCTGGTTTCATTGTATATGCCCTTATCAACTTAGTTTTGGTCTTTTCCTCTGTATATATTGTCACACAATTTGCACCAGCGTCAGCTGGATCTGGTATTCCTGAAATCAAGGGTTACTTGAATGGAATTGATGTTCATGGCATCCTTCTCTTCAGAACCTTGATTGGAAAGATTTTTGGTAGCATTGGTTCAGTGGGAGGGGGCCTTGCTTTGGGTAAAGAAGGTCCTCTTGTTCATACTGGTGCATGTATTGCTTCTTTGCTTGGACAAGGTGGATCCACCAAATATCATCTAAGTTCGAGGTGGTTTCAAGTATTCAAAAGTGATAGAGACCGCCGTGATCTTGTAACCTGTGGGTGTGCAGCTGGAGTTGCAGCTGCATTTAGAGCTCCAGTTGGTGGTGTATTGTTTGCATTGGAAGAGGTGACGTCATGGTGGAGGAGTCAACTGATGTGGCGGGTCTTCTTCACATCTGCTGTTGTGGCTGTTGTGGTGCGTACTGCAATGGGGTGGTGTAAGAATGAGAGGTGTGGACATTTTGGCTCGGGCGGATTCATAATATGGGATGTATCAGATGGTCAAGAGGATTATTCCTTCGTGGAGTTATTACCAATGGCTATTATTGGGGTTATTGGAGGTTTGCTAGGAGCCTTGTTTAACCAGCTTACTCTTTATATTACTTCTTGGCGCCGCAATTATCTGCACAAAAAAGGGATCCGTGTCAAGGTTGTTGAAGCATGCCTTGTCTCACTGTTAACATCAGTTATTTCATTTTGCATACCGCTTCTCAGAAAATGTAGTCCTTGCCCTGAATCTGATCCTGATTGTCCTCGGCCTCCTGGAATGTATGGGAATTATGTCAATTTCTTTTGTAGCAAAGAAAAGGAATACAATGATCTTGCTACTATTTTCTTTAATACGCAGGATGATGCCATAAGGAACTTGTTCAGTGCAAAAACAATACATGAGTTCAGCGCCCAAAGTTTATTAACCTTTTTGGTTATGTTTTATACTTTAGCCTTGGTGACATTTGGTACTGCTGTTCCAGCTGGTCAGTTTGTTCCTGGAATCATGATAGGATCAACATATGGACGTCTAGTTGGTATGCTTGTTGTAAGACATTACAGAAAGCTCAACATTGAAGAGGGAACGTATGCTCTGCTGGGAGCTGCATCTTTTCTTGGAGGTTCAATGCGGATGACAGTGTCTCTGTGTGTCATTATGGTTGAAATCACAAATAACTTAAAACTTTTACCTCTTATTATGCTTGTTCTTCTTATATCAAAGGCTGTCGGTGATGCTTTTAATGAGGGTCTCTATGAAGAGCAGGCACGACTGAGGGGTATTCCATTACTGGAACCAAGGCCCAAATATGTGATGCGGAATATGACAGCAAGGGAGGCCTGTGGGAGTGGAATGGTGCTCTCCTTCCCCCGTGTTGTTAAGGTTGCAGATGTAGTTTGTATTCTTCGGAGCAACAAACACAACGGTTTTCCTGTGATTGATCACACAAGTGGAAAGCCACTTGTTATTGGATTAGCACTTCGAAGTCATTTGTTGGTAATTCTGCAATCAAAGGTTGATTTCCAGCATAGTCCTTTACCATCTGATCCCAGAGGTGGAGCGAAGCCAATAAGGCATGACTTTGGTGAATTTGCGAAGCCTGTTTCTAGTAAGGGAATATCTATAGATGATATACTTTTAAGTTCAGATGACTTGGAAATGTACATAGATCTTGCCCCTTTTTTGAATCCATCACCATATGTTGTGCCTGAAGATATGTCGTTGACAAAGGTTTACAATCTTTTCCGCCAACTAGGGTTGAGACATCTATTTGTTGTTCCACGTCCGTCTCATGTGCTTGGCTTGATAACCAGAAAAGACTTGTTGATTGAGGACACTGAAAATGTGAATACGGTAGAGCTCCAGTCAACTAGAGTAAGAATGCAGAATCGCAATAAAAGATTGATGACCAGGAATGCAGATGCTGAGCGGCCTTTGTTAAATGGCCTACTGGTTCAGGATCAAATTGGCTAA 2391 0.4258 MLSNHFQNGIETAKLAWSRIPNSEDLLYLDDAVGLLKKSDGSGVESLDYEVIENYAYREEQAQRGKLYVSYLLVVKWLFALLIGIGTGLAAVFINISVENFAGWKYSLTFNIIQKSYVAGFIVYALINLVLVFSSVYIVTQFAPASAGSGIPEIKGYLNGIDVHGILLFRTLIGKIFGSIGSVGGGLALGKEGPLVHTGACIASLLGQGGSTKYHLSSRWFQVFKSDRDRRDLVTCGCAAGVAAAFRAPVGGVLFALEEVTSWWRSQLMWRVFFTSAVVAVVVRTAMGWCKNERCGHFGSGGFIIWDVSDGQEDYSFVELLPMAIIGVIGGLLGALFNQLTLYITSWRRNYLHKKGIRVKVVEACLVSLLTSVISFCIPLLRKCSPCPESDPDCPRPPGMYGNYVNFFCSKEKEYNDLATIFFNTQDDAIRNLFSAKTIHEFSAQSLLTFLVMFYTLALVTFGTAVPAGQFVPGIMIGSTYGRLVGMLVVRHYRKLNIEEGTYALLGAASFLGGSMRMTVSLCVIMVEITNNLKLLPLIMLVLLISKAVGDAFNEGLYEEQARLRGIPLLEPRPKYVMRNMTAREACGSGMVLSFPRVVKVADVVCILRSNKHNGFPVIDHTSGKPLVIGLALRSHLLVILQSKVDFQHSPLPSDPRGGAKPIRHDFGEFAKPVSSKGISIDDILLSSDDLEMYIDLAPFLNPSPYVVPEDMSLTKVYNLFRQLGLRHLFVVPRPSHVLGLITRKDLLIEDTENVNTVELQSTRVRMQNRNKRLMTRNADAERPLLNGLLVQDQIG 796
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele23g1780 796 Pfam CBS domain 702 748 IPR000644 -
Lele23g1780 796 PRINTS Plant CLC chloride channel signature 50 58 IPR002251 GO:0005247|GO:0006821|GO:0016020
Lele23g1780 796 PRINTS Plant CLC chloride channel signature 292 299 IPR002251 GO:0005247|GO:0006821|GO:0016020
Lele23g1780 796 PRINTS Plant CLC chloride channel signature 418 434 IPR002251 GO:0005247|GO:0006821|GO:0016020
Lele23g1780 796 PRINTS Plant CLC chloride channel signature 260 268 IPR002251 GO:0005247|GO:0006821|GO:0016020
Lele23g1780 796 PRINTS Plant CLC chloride channel signature 274 284 IPR002251 GO:0005247|GO:0006821|GO:0016020
Lele23g1780 796 CDD ClC_6_like 45 570 - -
Lele23g1780 796 SMART cbs_1 591 642 IPR000644 -
Lele23g1780 796 SMART cbs_1 704 752 IPR000644 -
Lele23g1780 796 FunFam Chloride channel ClC3 68 385 - -
Lele23g1780 796 Pfam Voltage gated chloride channel 132 550 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Lele23g1780 796 CDD CBS_pair_voltage-gated_CLC_euk_bac 592 748 - -
Lele23g1780 796 FunFam Chloride channel protein 693 784 - -
Lele23g1780 796 ProSiteProfiles CBS domain profile. 701 758 IPR000644 -
Lele23g1780 796 PRINTS Chloride channel signature 501 517 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Lele23g1780 796 PRINTS Chloride channel signature 466 486 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Lele23g1780 796 PRINTS Chloride channel signature 519 538 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Lele23g1780 796 PRINTS Chloride channel signature 239 258 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Lele23g1780 796 PRINTS Chloride channel signature 557 571 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Lele23g1780 796 PRINTS Chloride channel signature 144 161 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Lele23g1780 796 PRINTS Chloride channel signature 175 194 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Lele23g1780 796 Gene3D Clc chloride channel 69 571 - -
Lele23g1780 796 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 37 753 - -
Lele23g1780 796 SUPERFAMILY CBS-domain pair 575 748 IPR046342 -
Lele23g1780 796 Gene3D - 594 755 IPR046342 -
Lele23g1780 796 SUPERFAMILY Clc chloride channel 54 572 IPR014743 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele23g1780 Lele-ChrLele23 21351262 21359614 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele23g1780 1 766 Ion Channels AT5G26240 83.290 0.0 1224