Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele23g1663 ATGGCAGCTTCTGCAGCTGCGGCTATAGGCTCCTCATTCTCTTCCTCCATCAACACTCTCAAGTGCCTTCGTTCATCCAAGAACTTGTCCACTGAACCCCCTCTCCTCAGAATTTCACCAAACCGCGTGTTGGCGTCTGGGTCACTATCGCACTTGGTGGAACCACTTTCTTTTGATACCAATGTCAACAAGTTGTGGGTTTCAAGGGTTTCGGCACAAGAAGAGCTTGTAGTGGTCGATGAGATTGATGCTGGTTTAGTTGAAGAAAATGAAGAGGGAGAAAAGAAAGTGGTGGAAGAAGAAGGAGAGGCTGAAGAAGTTTCTGTCAACACTAAACTTTATTTTGGGAACTTGCCTTACAGTGTTGATAGTGCACAACTTGCAGCGATTATTCAGGATTACGGCAGCCCAGAACTCATTGAGGTTCTTTATCACAGAGAGACTGGAAAAAGCAGAGGTTTTGCATTTGTTACAATGAGCAGTATCGAGGATTGCAATGCAGTGATAGAAAATCTTGAAGGAACTGAATATTTGGGTCGAACCCTGCGAGTGAACTTCTCCGACAAACCTAAACCGAAAGAACCATTGTACCCTGAAACTGAACACAAGCTTTTTGTTGGGAACTTGTCATGGTCTGTAACTTCTGAGAGTCTGACAGAAGCTTTTCAAGAATATGGACATGTGGTTGGAGCAAGGGTGTTATATGATGGGGAAACAGGAAGATCCCGCGGTTATGGCTTTGTTTGCTATTCAACCAAATCAGAAATGGAAACTGCCCTTTCATCCATGAATGGAGTGGAACTTGAAGGACGGGCAATGCGTGTAAGCTTGGCTGAAGGGAAACGATCATCAAGCGAATAG 861 0.446 MAASAAAAIGSSFSSSINTLKCLRSSKNLSTEPPLLRISPNRVLASGSLSHLVEPLSFDTNVNKLWVSRVSAQEELVVVDEIDAGLVEENEEGEKKVVEEEGEAEEVSVNTKLYFGNLPYSVDSAQLAAIIQDYGSPELIEVLYHRETGKSRGFAFVTMSSIEDCNAVIENLEGTEYLGRTLRVNFSDKPKPKEPLYPETEHKLFVGNLSWSVTSESLTEAFQEYGHVVGARVLYDGETGRSRGYGFVCYSTKSEMETALSSMNGVELEGRAMRVSLAEGKRSSSE 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele23g1663 286 SMART rrm1_1 203 276 IPR000504 GO:0003723
Lele23g1663 286 SMART rrm1_1 112 185 IPR000504 GO:0003723
Lele23g1663 286 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 113 183 IPR000504 GO:0003723
Lele23g1663 286 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 204 273 IPR000504 GO:0003723
Lele23g1663 286 SUPERFAMILY RNA-binding domain, RBD 197 283 IPR035979 GO:0003676
Lele23g1663 286 Gene3D - 192 286 IPR012677 -
Lele23g1663 286 PANTHER OS02G0815200 PROTEIN 45 282 - -
Lele23g1663 286 FunFam 31 kDa ribonucleoprotein, chloroplastic 72 192 - -
Lele23g1663 286 FunFam 28 kDa ribonucleoprotein, chloroplastic 193 284 - -
Lele23g1663 286 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 202 280 IPR000504 GO:0003723
Lele23g1663 286 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 111 189 IPR000504 GO:0003723
Lele23g1663 286 Gene3D - 71 191 IPR012677 -
Lele23g1663 286 SUPERFAMILY RNA-binding domain, RBD 110 193 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele23g1663 Lele-ChrLele23 20635291 20637408 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele23g1663 111 281 Eukaryotic Initiation Factors Gene Family AT3G16380 31.720 7.13e-18 81.6