Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele23g1646 ATGGACTCGGATCAAGGGAAGCTTTTTATTGGTGGGATATCGTGGGAAACCACGGAGGACAAACTGAAAGATCATTTCAGCAACTACGGTGACGTTCTGCACACCTCCGTTATGAGAGAGAAGAACACTGGGAAACCCAGAGGCTTTGGATTCGTTGTGTTCGCAGATCCTTCGATTCTCGATAGGGTTCTCGAAGAGAAACACGTAATCGATGGCAGAACGGTAGATGCCAAGAAGGCCTTCTCCAGAGAGGATCAACAAATTTCTGCTGTCTCCAGAGCTGGAAATCCCAACTCTTACAGAAATTCTGGAAATGGAGGAAATATCAGAACCAAAAAAATATTTGTTGGAGGGCTGCCTCCTACATTGACCGAAGAAAAGTTTCGTCAGTATTTTGAGGCTTATGGTCATGTTACTGATGTAGTACTCATGTATGACCAGAATACTGGACGGCCACGTGGATTTGGGTTTATTTCATTTGATTCTGAAGATGCAGTTGACAGGGTTTTGCATAAGCCATTTCACGATTTAAATGGTAAGCAAGTAGAAGTGAAGCGTGCACTTCCAAAGGATGCTAATCCGGGTGCAAGTGGCCGTATGGGTGGTGCGGGAGGAGGTGGCGGTGGTTATCAGGGGTACGGGGCATCTGGTGGCAGCCAAAATGCATATGATGGTCGGATGGATTCTGGTAGGTATGTGCAGGCTCCAAGCGCTGGGGGTGGATTTCCACCTTATGGTTCTTCTGGATATGGTGCTGCTGGGTACGGTTATGGTCCTGCTAATAATGGCATGGGTTATGCCGGATATGGAAGTTATGGTGGTGCAGGCACTGGGTACGGTGGACCTGCTGGTGCAACCTATGGGACTCCCAACATCCCTAATGCTGCTTATGCTGGTGGTCCACCTGGTGGCCCAAGGAGTTCATGGCCTGCTCAAGCTCCCTCCGGTTATGGTTCTATGGGTTATGGGAACACTGCTTCTTGGGGTGCTCCAGGTGGCGGTGCTGGATCTGGGGGCGGCGGCGGCCCTGGTTCAGCACCTGCAGGTCAATCACCCAGTGGAGCTGCTGGATATGGAAATCAAGGGTATGGATATGGAGGTTATGGTGGGTATGGTGGAAGTGATAGTTCTTATGGGAACCCTGGTGCATATGGTGCTGTTGGTGGGCGGTCTGGAAGTGCCCCAAACAGTTATGCTGGTGGTGCAGGAGGAAATGAATCACAAGGGAGTGGTGGCAACTACAATGGAAGTGGCTATGGTGATGCAAATGGAAATTCAGGATATGGAAATGCTGCATGGAGATCTGATCCTTCGCAACCATCTGGAAATTATGGGACTCCTCAGGCAAATGGTCCTCATGGTGGGCAAGTTGGTTATGGCAGCAGCTATGGTGGTGCACAGTCACGACAGGCCCAGCAGCAGTAA 1425 0.5011 MDSDQGKLFIGGISWETTEDKLKDHFSNYGDVLHTSVMREKNTGKPRGFGFVVFADPSILDRVLEEKHVIDGRTVDAKKAFSREDQQISAVSRAGNPNSYRNSGNGGNIRTKKIFVGGLPPTLTEEKFRQYFEAYGHVTDVVLMYDQNTGRPRGFGFISFDSEDAVDRVLHKPFHDLNGKQVEVKRALPKDANPGASGRMGGAGGGGGGYQGYGASGGSQNAYDGRMDSGRYVQAPSAGGGFPPYGSSGYGAAGYGYGPANNGMGYAGYGSYGGAGTGYGGPAGATYGTPNIPNAAYAGGPPGGPRSSWPAQAPSGYGSMGYGNTASWGAPGGGAGSGGGGGPGSAPAGQSPSGAAGYGNQGYGYGGYGGYGGSDSSYGNPGAYGAVGGRSGSAPNSYAGGAGGNESQGSGGNYNGSGYGDANGNSGYGNAAWRSDPSQPSGNYGTPQANGPHGGQVGYGSSYGGAQSRQAQQQ 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele23g1646 474 MobiDBLite consensus disorder prediction 379 474 - -
Lele23g1646 474 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 112 189 IPR000504 GO:0003723
Lele23g1646 474 SUPERFAMILY RNA-binding domain, RBD 111 218 IPR035979 GO:0003676
Lele23g1646 474 MobiDBLite consensus disorder prediction 333 353 - -
Lele23g1646 474 MobiDBLite consensus disorder prediction 86 107 - -
Lele23g1646 474 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 82 IPR000504 GO:0003723
Lele23g1646 474 MobiDBLite consensus disorder prediction 398 450 - -
Lele23g1646 474 SMART rrm1_1 113 185 IPR000504 GO:0003723
Lele23g1646 474 SMART rrm1_1 7 78 IPR000504 GO:0003723
Lele23g1646 474 CDD RRM2_DAZAP1 110 189 IPR034131 GO:0003723
Lele23g1646 474 FunFam heterogeneous nuclear ribonucleoprotein 1 107 226 - -
Lele23g1646 474 Gene3D - 107 229 IPR012677 -
Lele23g1646 474 Gene3D - 4 88 IPR012677 -
Lele23g1646 474 CDD RRM1_hnRNPA_hnRNPD_like 8 78 - -
Lele23g1646 474 FunFam Heterogeneous nuclear ribonucleoprotein 1 5 87 - -
Lele23g1646 474 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 114 180 IPR000504 GO:0003723
Lele23g1646 474 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8 73 IPR000504 GO:0003723
Lele23g1646 474 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 1 1 474 - -
Lele23g1646 474 SUPERFAMILY RNA-binding domain, RBD 3 109 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele23g1646 Lele-ChrLele23 20557537 20559826 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele23g1646 8 200 Eukaryotic Initiation Factors Gene Family AT2G23350 23.558 2.06e-08 54.7