Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele23g1613 ATGGAAGCCGAAGATGGAATGGCAGATCTTGCTAGCAATGTAAATATTGAGCAAGCACTTATTGCTTTGAAAAAAGGCACACAGTTAATTAAGTATAGTCGGAAAGGAAAGCCAAAACTTTGTCCATTCAGACTTTCATCGGATGAAACAACGTTGATTTGGATAAGTCACAGAGGGGAAAGGCATCTGAATTTGTCCGGTGTTTCACATATTATCTCTGGACAGAGAACGGCTGTCTTTAAAAGATATTTGTGTCCTGAAAAGGATTCTCTGTCATTTTCTGTTCTTTTCAAGAACAATGAACGGTCACTTAATCTGATTTGTAAGGATAAAGCTGAAGCAGATGTATGGATTACAGGTCTCAAGGCATTAATATCTCCCGGACAACGTCTCAGGCATAGGCATACCACAAGTTACTTTTCGAGTCTGCAAGGGAGCATTGACTTTACTGATGATGGTCATACTTTTAATGCAACGGTAGAGTATCCTTCCAGCAATCTTCATGGTCGAGTTTCCATTGATTTGGCTTCTCGTGACACTTTATTGAATTGGGCAAACTCAGATGTGGGGTTAGAACGTGTAAATATGCAAATGAGGGTAGGAGCTGGAGACAATTTCCGTCTTAGTGTGTCCAGTGCAGCATCTGGAATAGATGACATTGAATCGCTTGGAGACGTTTTTGTGTGGGGAGAGGTTTGGGCAGATGGGGTTTCATCTGATGTATTGGGGAATCAGGTCCCTGTGAAGACAGATGTATTGATTCCCAAGTCGTTAGAGTCAAATGTTGTTCTTGATGTTCAACAGATTGCATCTGGTGTCCGCCATACTGCTCTAGTGACAAGGCAAGGAGAGCTTTTCACTTGGGGAGAAGAATGTGGAGGAAGACTTGGTCATGGGATTGATAGAGACTTTAGCCGTCCTCGTCTAGTTGAATTCCTGGCAGTGAATAACGTGGAATTTGTGGCATGTGGAGAGTATCATACATGTGCCGTATCTACTTCCGGTGATTTATTCTCTTGGGGTGATGGTGCCCACCATGCTGGACTTCTTGGTCATGGAACTGACATTAACCACTGGATACCAAAGAGAATCGTAGGCCCTTTAGAAGGACTTCAAGTTTTATCTGTTGCATGCGGCACATGGCATTCGGCTTTGGCAACATCCAATGGGAAATTGTTTACCTTTGGGGATGGAGCATTTGGTGTCTTGGGCCATGGAGATATAGTGAGTGTGCCATATCCAAAGGAGGTGCAATCATTGAGTGGACTAAAGACCATTAAGGTTGCATGTGGAGTATGGCACACCGCAGCTATTGTAGAGGTTATGGGCCAAAGCGGTTCAAATGTCTCATCTAGAAAGCTCTTTACTTGGGGTGATGGTGACAAATATCGTTTGGGTCATGGCAACAAGGAAACTTACCTCCAACCCACCTGTGTCTCTGCACTTATTGAATACAATTTCCAACAGGTAACATGTGGACACACTTTGACAGTCGCCCTCACTACAACAGGTCAAGTCTTCACTATGGGAGGCACTGCAAATGGTCAACTGGGGAATCCTCTCTCTGATGGAAAAGTTCCTATCATGGTACAAGATAAGTTGGTTGGTGAATTTGTTGAGGAAATAGCATGTGGAGAACATCATGTTGCTGCCTTGACGTCAAGAAGTGAACTATATACTTGGGGGAAAGGTGCCAATGGAAGATTGGGACATGGAGACGTAGACGATAGGAAATCTCCAACATTGGTTGAAGGCTTGAAAGATAGGCATGTAAAAAGTATCTCATGTGGCTCAAACTTCATGTCTTGTATTTGCATCCACAAATGGGTCTCTGGAGTAGACCATTCTGTTTGCTCCGGTTGCCGGCAAGCATTTGGTTTTACTAGAAAAAGGCACAACTGTTATCATTGTGGATTGGTGCATTGTCATTCTTGTAGCTCTAAGAAGGCACTGAAAGCAGCATTAGCTCCAACGCCTGGAAAACCACATCGTGTCTGTGATGCATGTTATGCAAAACTTAAAAATGCCGAGATTGGCCAGGCTTCCACTTTTAGCAGAAGAATTACCCCTCCACGTAGATCAATAGATAATAGAGAAAGAATAGAATGGATAGAGCCAAAGTCTTCAAGAGTTCTCTTATCTCCCATCACAGAACCTGTAAAATACCTTGAGATAAGGACTAGTAAGCCAGGACTTAGATCTGATTCATCTTCCATAGTTCGAGCTTCTCAAGTTCCATCACGTTTACAGTTAAAAGATATTGCCTTTCCAAGTTCACTGAGCAACATTCAGCATGCTTTCAAGCCTGTTGTTAGACCACCTAGTCCACCACGAACCCCCCCTGCCAATTCTAGATCTTCATCACCATATCCAAGAAGACCCAGCTCACCACATTCATCACCCGCTCCTGGATTTTCTAAAAGTATTATAGATAGTTTGAGGAAGACCAATGAGATTTTGAATCAAGAAGTCTCGAAATTGCATAAACAAATTCGAAGTTTGAAGCAGAAGAATGAAACGCAAGATAAGGAGATACAGAAGCTTCAGAAAAATGTTGAGGAAGCCACCTCAATGACTCGGGAGAAATCTTCCAAGAGTCATGTAGCAAATGAATTTATCAAGTCCATAAAAGATCAGTTGAAGGAAATGGCTAACAAGCTGCCACCAGAGGTTTCTAACTGTAAAAGCTTGAAAATCATGCACGACCAAGCAGAAGATTTTCTAAGAAAAATTGCAGAATCTCAAACTTCTTCCTCTTTACCATCAAACTTAGAGTCTGATCAACTAAATGCAACTACTGATATAACTGCTTCAGATGGCGACACTGCGAAACCACAAGAACAAAAACTGGAGGACGGTGAAGATGCTGCAGGAATTGATTCATCTCAAGATGGTGGAAAAGTTCAAGATGGCAATGGATCCTCTATTTCTACTAGAGGAGCAGCAGGGCCTCCACAAAGCTCAGATCATGGCTCAGGCTCACCGAACTCTTCAAGACCTAGGAAAGAAGGAGAAACAGAAACCATTGAACAATTTGCACCCGGTGTGTATGTGACACTCATAGTGCGTCCCGGTGGTTATAAGATTTTTAAACGAGTCAGGTTCAGTAAGCGAAGGTTCGATGAACAACAGGCAGAAGAATGGTGGAGCAAAAACAAAGATAAGGTGCTTAGGAAATATAATCCATCAGCAACAAATTTTGCAGCTACAGGGCCACCTAGCACCCGCCCTCCGCCGCCGCCTCCTGTTGAAGAGAACGTTGAGTCTTCACCTTCCTAA 3279 0.43 MEAEDGMADLASNVNIEQALIALKKGTQLIKYSRKGKPKLCPFRLSSDETTLIWISHRGERHLNLSGVSHIISGQRTAVFKRYLCPEKDSLSFSVLFKNNERSLNLICKDKAEADVWITGLKALISPGQRLRHRHTTSYFSSLQGSIDFTDDGHTFNATVEYPSSNLHGRVSIDLASRDTLLNWANSDVGLERVNMQMRVGAGDNFRLSVSSAASGIDDIESLGDVFVWGEVWADGVSSDVLGNQVPVKTDVLIPKSLESNVVLDVQQIASGVRHTALVTRQGELFTWGEECGGRLGHGIDRDFSRPRLVEFLAVNNVEFVACGEYHTCAVSTSGDLFSWGDGAHHAGLLGHGTDINHWIPKRIVGPLEGLQVLSVACGTWHSALATSNGKLFTFGDGAFGVLGHGDIVSVPYPKEVQSLSGLKTIKVACGVWHTAAIVEVMGQSGSNVSSRKLFTWGDGDKYRLGHGNKETYLQPTCVSALIEYNFQQVTCGHTLTVALTTTGQVFTMGGTANGQLGNPLSDGKVPIMVQDKLVGEFVEEIACGEHHVAALTSRSELYTWGKGANGRLGHGDVDDRKSPTLVEGLKDRHVKSISCGSNFMSCICIHKWVSGVDHSVCSGCRQAFGFTRKRHNCYHCGLVHCHSCSSKKALKAALAPTPGKPHRVCDACYAKLKNAEIGQASTFSRRITPPRRSIDNRERIEWIEPKSSRVLLSPITEPVKYLEIRTSKPGLRSDSSSIVRASQVPSRLQLKDIAFPSSLSNIQHAFKPVVRPPSPPRTPPANSRSSSPYPRRPSSPHSSPAPGFSKSIIDSLRKTNEILNQEVSKLHKQIRSLKQKNETQDKEIQKLQKNVEEATSMTREKSSKSHVANEFIKSIKDQLKEMANKLPPEVSNCKSLKIMHDQAEDFLRKIAESQTSSSLPSNLESDQLNATTDITASDGDTAKPQEQKLEDGEDAAGIDSSQDGGKVQDGNGSSISTRGAAGPPQSSDHGSGSPNSSRPRKEGETETIEQFAPGVYVTLIVRPGGYKIFKRVRFSKRRFDEQQAEEWWSKNKDKVLRKYNPSATNFAATGPPSTRPPPPPPVEENVESSPS 1092
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele23g1613 1092 MobiDBLite consensus disorder prediction 934 1010 - -
Lele23g1613 1092 Pfam Pleckstrin homology domain 17 125 IPR001849 -
Lele23g1613 1092 Pfam Regulator of chromosome condensation (RCC1) repeat 557 603 IPR000408 -
Lele23g1613 1092 Pfam Regulator of chromosome condensation (RCC1) repeat 454 500 IPR000408 -
Lele23g1613 1092 Pfam Regulator of chromosome condensation (RCC1) repeat 334 385 IPR000408 -
Lele23g1613 1092 Pfam Regulator of chromosome condensation (RCC1) repeat 283 331 IPR000408 -
Lele23g1613 1092 Pfam Regulator of chromosome condensation (RCC1) repeat 504 552 IPR000408 -
Lele23g1613 1092 Pfam Regulator of chromosome condensation (RCC1) repeat 389 438 IPR000408 -
Lele23g1613 1092 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 504 555 IPR000408 -
Lele23g1613 1092 MobiDBLite consensus disorder prediction 965 999 - -
Lele23g1613 1092 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 390 441 IPR000408 -
Lele23g1613 1092 SUPERFAMILY FYVE/PHD zinc finger 608 675 IPR011011 -
Lele23g1613 1092 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 452 503 IPR000408 -
Lele23g1613 1092 Pfam Transcription factor regulating root and shoot growth via Pin3 1005 1060 IPR013591 -
Lele23g1613 1092 Pfam FYVE zinc finger 608 674 IPR000306 GO:0046872
Lele23g1613 1092 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 335 389 IPR000408 -
Lele23g1613 1092 CDD FYVE_like_SF 618 670 - -
Lele23g1613 1092 MobiDBLite consensus disorder prediction 770 784 - -
Lele23g1613 1092 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 224 282 IPR000408 -
Lele23g1613 1092 Gene3D - 177 449 IPR009091 -
Lele23g1613 1092 Gene3D - 450 621 IPR009091 -
Lele23g1613 1092 Gene3D - 12 135 IPR011993 -
Lele23g1613 1092 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 428 438 IPR000408 -
Lele23g1613 1092 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 60 882 - -
Lele23g1613 1092 MobiDBLite consensus disorder prediction 1072 1092 - -
Lele23g1613 1092 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 283 334 IPR000408 -
Lele23g1613 1092 CDD PH_PLC_plant-like 16 126 - -
Lele23g1613 1092 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 612 674 IPR017455 -
Lele23g1613 1092 MobiDBLite consensus disorder prediction 1060 1092 - -
Lele23g1613 1092 PRINTS Chromosome condensation regulator RCC1 signature 335 351 IPR000408 -
Lele23g1613 1092 PRINTS Chromosome condensation regulator RCC1 signature 551 572 IPR000408 -
Lele23g1613 1092 PRINTS Chromosome condensation regulator RCC1 signature 376 392 IPR000408 -
Lele23g1613 1092 PRINTS Chromosome condensation regulator RCC1 signature 285 301 IPR000408 -
Lele23g1613 1092 PRINTS Chromosome condensation regulator RCC1 signature 392 406 IPR000408 -
Lele23g1613 1092 PRINTS Chromosome condensation regulator RCC1 signature 493 511 IPR000408 -
Lele23g1613 1092 PRINTS Chromosome condensation regulator RCC1 signature 266 279 IPR000408 -
Lele23g1613 1092 SUPERFAMILY PH domain-like 16 125 - -
Lele23g1613 1092 MobiDBLite consensus disorder prediction 785 808 - -
Lele23g1613 1092 SUPERFAMILY RCC1/BLIP-II 223 609 IPR009091 -
Lele23g1613 1092 FunFam PH, RCC1 and FYVE domains-containing protein 1 201 443 - -
Lele23g1613 1092 Pfam Transcription factor BRX N-terminal domain 861 895 IPR027988 -
Lele23g1613 1092 SMART fyve_4 606 675 IPR000306 GO:0046872
Lele23g1613 1092 Coils Coil 810 865 - -
Lele23g1613 1092 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 622 679 IPR013083 -
Lele23g1613 1092 MobiDBLite consensus disorder prediction 767 808 - -
Lele23g1613 1092 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 269 279 IPR000408 -
Lele23g1613 1092 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 556 607 IPR000408 -
Lele23g1613 1092 ProSiteProfiles BRX domain profile. 1006 1061 IPR013591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele23g1613 Lele-ChrLele23 20344028 20349638 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele23g1613 1003 1074 Major Intrinsic Protein MIP AT1G31880 38.889 5.69e-10 60.5