LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele23g1592	ATGGACTCCTCTTTCTCCATCTTCCACTCCCCCGCCTCCGACTTCTCCTCCGATTCCTCCTTTGCTTCCTCCGATTCCTTCTTCTCCTCCAACTTCCCCAACTCTTACCTCCCCTTCAACGAGAATGACCCCGACGAGATGCTTCTCTACGGCATGATTTCCGAGGCCAACCACAATGATGCCCGCGACGAATCTTTCAGTTCCGTTAAGGAGGAGGAGGTCAGCTCCGACGCCACTGCTTTCGGCGCCGCCGCCACCCACAAGGAGAAGAGCTACAGAGGCGTGCGGCGGCGCCCCTGGGGGAAATTCGCGGCCGAGATAAGGGATTCCACCAGGCACGGCATAAGGGTGTGGCTGGGGACCTTCGATAGTGCAGAGGCGGCGGCTTTAGCATACGATCAAGCGGCGTTTTCCATGAGGGGATCGGCGGCGATACTGAACTTCCCGGTGGAGAGGGTGAGGGAGTCTCTGAAAGAGATGAACTACGGATCGGAAGAAGGGTGCTCGCCGGTGGTGGCTCTAAAGAGAAAGCACTCGTTGAGAAGAAAAGTGAATAGTAACAAGAAGCAGAACAAGGCGGACGGTGGTGATATGAGAATAGACGATGTGGTGGTGCTAGAAGATCTCGGCTCAGATTACTTGGAACAACTCCTGATGTCCTCGGAGAATCCTAGGCCTTCATAA	684	0.5541	MDSSFSIFHSPASDFSSDSSFASSDSFFSSNFPNSYLPFNENDPDEMLLYGMISEANHNDARDESFSSVKEEEVSSDATAFGAAATHKEKSYRGVRRRPWGKFAAEIRDSTRHGIRVWLGTFDSAEAAALAYDQAAFSMRGSAAILNFPVERVRESLKEMNYGSEEGCSPVVALKRKHSLRRKVNSNKKQNKADGGDMRIDDVVVLEDLGSDYLEQLLMSSENPRPS	227

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele23g1592	227	SUPERFAMILY	DNA-binding domain	91	151	IPR016177	GO:0003677
	Lele23g1592	227	Gene3D	AP2/ERF domain	90	151	IPR036955	GO:0003700\|GO:0006355
	Lele23g1592	227	ProSiteProfiles	AP2/ERF domain profile.	91	149	IPR001471	GO:0003700\|GO:0006355
	Lele23g1592	227	PANTHER	DNA-BINDING DOMAIN	56	219	IPR044808	GO:0003700\|GO:0009873
	Lele23g1592	227	MobiDBLite	consensus disorder prediction	1	25	-	-
	Lele23g1592	227	SMART	rav1_2	91	155	IPR001471	GO:0003700\|GO:0006355
	Lele23g1592	227	PRINTS	Ethylene responsive element binding protein signature	115	131	IPR001471	GO:0003700\|GO:0006355
	Lele23g1592	227	PRINTS	Ethylene responsive element binding protein signature	92	103	IPR001471	GO:0003700\|GO:0006355
	Lele23g1592	227	CDD	AP2	90	150	IPR001471	GO:0003700\|GO:0006355
	Lele23g1592	227	FunFam	Ethylene-responsive transcription factor 2	90	151	-	-
	Lele23g1592	227	Pfam	AP2 domain	91	141	IPR001471	GO:0003700\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele23g1592	Lele-ChrLele23	20213798	20214481	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele23g1592	37	223	AP2-EREBP Transcription Factor Family	AT3G23240	61.702	9.64e-77	229

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Lele23g1592		AP2	8.3e-15	CL0081