LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele23g1590	ATGGAGGCGGATGGGTCGGGATCCAGAAGGGCCAAGGATGCACAGGGCGGCGGAGATGTCCGGTACCGGGGAGTAAGGCGGCGGCCGTGGGGGAAGTTCGCGGCGGAGATCCGGGACTCCGCGAGGCAGGGCCAGAGGGTGTGGCTAGGGACTTTCAACACGGCGGAGGATGCCGCCAGGGCCTACGACCAAGCCGCTTATGCCATGAGAGGCCCATTTGCTATCCTCAACTTCCCCGATGAATACCCACTTTCCGCCGGTGGCGCTGACACCATGGCCGACTATCGTTCCTCTGCTTCTTCCCCGCCGAGTAGTGATGCGCCTGCAAAACAAGTGTTCGAGTTCGAGTACTTGGATGATAAGTTGCTGGAGGAGCTTCTTGATTTTGAAGTCAACAGGATGACGGGAAATTGA	414	0.5942	MEADGSGSRRAKDAQGGGDVRYRGVRRRPWGKFAAEIRDSARQGQRVWLGTFNTAEDAARAYDQAAYAMRGPFAILNFPDEYPLSAGGADTMADYRSSASSPPSSDAPAKQVFEFEYLDDKLLEELLDFEVNRMTGN	137

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele23g1590	137	CDD	AP2	21	80	IPR001471	GO:0003700\|GO:0006355
	Lele23g1590	137	FunFam	Ethylene-responsive transcription factor 2	21	80	-	-
	Lele23g1590	137	ProSiteProfiles	AP2/ERF domain profile.	21	79	IPR001471	GO:0003700\|GO:0006355
	Lele23g1590	137	Gene3D	AP2/ERF domain	20	80	IPR036955	GO:0003700\|GO:0006355
	Lele23g1590	137	MobiDBLite	consensus disorder prediction	1	23	-	-
	Lele23g1590	137	PRINTS	Ethylene responsive element binding protein signature	45	61	IPR001471	GO:0003700\|GO:0006355
	Lele23g1590	137	PRINTS	Ethylene responsive element binding protein signature	22	33	IPR001471	GO:0003700\|GO:0006355
	Lele23g1590	137	Pfam	AP2 domain	21	71	IPR001471	GO:0003700\|GO:0006355
	Lele23g1590	137	PANTHER	DNA-BINDING DOMAIN	14	128	IPR044808	GO:0003700\|GO:0009873
	Lele23g1590	137	SMART	rav1_2	21	85	IPR001471	GO:0003700\|GO:0006355
	Lele23g1590	137	SUPERFAMILY	DNA-binding domain	21	81	IPR016177	GO:0003677

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele23g1590	Lele-ChrLele23	20187896	20188309	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele23g1590	21	122	AP2-EREBP Transcription Factor Family	AT5G43410	62.745	1.51e-38	125

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Lele23g1590		AP2	7.7e-16	CL0081