Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele23g1589 ATGATCACCGGAGAGATTCCGTTTAATGTAGCTGATGACAATGATACTATTCACCTAACTTTCGTTAACGCGCGATCTGACGAGGACTGGAGAACTCATTTCTCTGCGTTTCCTTTCACATCTGATATGGATCTTGCAGGTAGGAGATTCTTGATCTCTGGTTCTGGTCCACAACCCCTTTCGCCATTGTCAAGCCCAGTGAGTTCATTCCTTCGCCCACATTCGCATTCTGCGAGTACCAGTTTTCCCATTATAGCTATCGCTATAATAGGGATACTCGCCACGGCTTTCTTGCTCGTTAGCTACTATATCTTCATCATCAAGTGCTGCCTCAATTGGCATCGCATAGATCTCCTAAGACGGTTCTCTCCATCCCGGCGTCGAGACGAGCCACCGATGACATATTCGCCTGCGGGCACGGAGCCTCGAGGACTCGACGAGGCCGTGATCCGATTAATCCCTGTCATCCATTACGAAGCAGAGGAAAACAGAGAATCCGGAGAGCGAAGCTTCTCGGAATGCTCTGTTTGCTTGAACGAGTTCCGCGAGAAGGAGAAGCTGAGGATTATACCGAATTGCAGCCACGTGTTCCACATAGATTGCATCGACGTTTGGCTTCAGAACAACGCCAATTGCCCACTCTGCAGAACAAGCATTTCCCTATCGACCAGATTCCAAGTCGATCAGATTCTAAATCCCAGACCCTCCTCCCAAGATCGACGCCCGTATGGCGAAAATCTCAACGGCGGGGATGAAGATTTTGTTGTGATTGAACTTAGCACTATCGGTCACGATAGAGACCAGAACTCGAACGGAACACAGGAAGGAGAAAACCCAGCGCGAGAGGTGAGTTCTTCTCCCAGGAAAATAATGGAGCAGAAGAAAAAAGCATGGAAGTTTCAGAAAGTGAAGAGCATGGGAGATGAGTGCATCGACACAAGAGGTAGTAAAGATGAGCAATTCTCAGTACTGCCCATGAGGAGGTCATTCTCCATGGATTCTTCAGGGGATAGGCAGTTGTACATGGCAGTTCAAGAAATTCTGAAGAAACAGAACAGGGAACAAGCGAGTGAGGTATCATCGTCCTCCATTAATGAAGGGTGTAGTAGTAGCGGTAGTGGTAGAGTGAAGAGGTCATTCTTTTCCTTCGGACATGGTAGCAGTAGATCTAGAAGTTCAGTCCAACCTGTTCATGTGGACCCCTAA 1206 0.4793 MITGEIPFNVADDNDTIHLTFVNARSDEDWRTHFSAFPFTSDMDLAGRRFLISGSGPQPLSPLSSPVSSFLRPHSHSASTSFPIIAIAIIGILATAFLLVSYYIFIIKCCLNWHRIDLLRRFSPSRRRDEPPMTYSPAGTEPRGLDEAVIRLIPVIHYEAEENRESGERSFSECSVCLNEFREKEKLRIIPNCSHVFHIDCIDVWLQNNANCPLCRTSISLSTRFQVDQILNPRPSSQDRRPYGENLNGGDEDFVVIELSTIGHDRDQNSNGTQEGENPAREVSSSPRKIMEQKKKAWKFQKVKSMGDECIDTRGSKDEQFSVLPMRRSFSMDSSGDRQLYMAVQEILKKQNREQASEVSSSSINEGCSSSGSGRVKRSFFSFGHGSSRSRSSVQPVHVDP 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele23g1589 401 MobiDBLite consensus disorder prediction 354 395 - -
Lele23g1589 401 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 135 221 IPR013083 -
Lele23g1589 401 SUPERFAMILY RING/U-box 173 224 - -
Lele23g1589 401 SMART ring_2 174 215 IPR001841 -
Lele23g1589 401 FunFam E3 ubiquitin-protein ligase ATL6 134 222 - -
Lele23g1589 401 MobiDBLite consensus disorder prediction 351 401 - -
Lele23g1589 401 CDD RING-H2_PA-TM-RING 173 216 - -
Lele23g1589 401 Pfam Ring finger domain 173 216 IPR001841 -
Lele23g1589 401 PANTHER RING-H2 FINGER PROTEIN ATL16 65 397 IPR044600 GO:0016567|GO:0016740
Lele23g1589 401 MobiDBLite consensus disorder prediction 263 281 - -
Lele23g1589 401 MobiDBLite consensus disorder prediction 263 291 - -
Lele23g1589 401 ProSiteProfiles Zinc finger RING-type profile. 174 216 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele23g1589 Lele-ChrLele23 20180598 20182494 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele23g1589 73 401 C3H Transcription Factor Family AT1G04360 50.833 3.72e-99 298