Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele23g1583 ATGGAGAGAAACAGTTTGAACAGCAACAAGAACCAGGTAATGAAAGAATACTGGGACTGCAAATCTCAGATCAGCTATGGAGGAGATGATTATATAAATGGATTCTCGTGGCCTCCAAGATCATACACTTGTAGCTTCTGCAAGAGGGAATTCAGATCTGCTCAAGCCCTTGGTGGCCATATGAATGTTCATAGGAGGGACAGAGCCAGGCTCAGGCAGCAATCACCTCCCACCACTACAACTCATGACAGTCACTCCCCCATGCTCAACCTAAATCTTAACCCTACCTCTGGTCCAGGGTTTTCAACCTCAACTTTGTCCTTATTACCATCTTCATCTTCTTCTACAATGCTCAGAAAACCATTCTCTGCTAGCACTACTTTACCCACCTTCGTTTCTCCTGTACTTTCTTCTTCATCTTCTCCTCCCCCTGCATCTACATCTCCTTCTTATGATCTGAAAAAATGGGCTGTGGACGGTATCATGTTGAACCCTTCTAGCACCAAGGCCTCGGAATCTACAAAGATGAAGAATATTGCAAATTCTTTATCGGGGTTTGGAGACTGTAATGACCCACCTTTTGCGCAAGAAGTTGGTTGCAAAGTGGTAAAGAAGGCTGAGATCATTAGGTTGGACTTGCATATAGGTTTACTTAGCGATTCCAAGGATGATTTAGATCTGGAGCTTCGATTGGAAGCTTTAAGATACCTATGTCGTAGTGTTGTGTATAATGAAATCTATATATCTTTACCATCTTTATCGTTTAGCACTACCCTTATCCCTCCTCCCCCAGTTTGTTTTGTGCCTGTTGTGTATGGATTGTACCTGCACTTCGCTAGTTGTGATTTTAAGGCACGTTATCCTTTCAAAATCTTGAAGGTTTTCAATTTTCTGTTTGTAGCGCTAGCCTGTCGTTTTGTCAAACACTTGAGTGGCGTTCCAAGTAACTTGGTTTTGGTGAACGGGAATGCTATAATGAATATGCATTGCAAGAGAACGAGGGTTGCAGCCTACGAAGCTGGGCGAGCTGATGATAATGATCAATCTAGGCCATCAATTGGATTTGGATCCCTCTTTCATGCTCCACACCGTTTAATTGGTTCTCTTCTCCAGTCTCAGCACACTTTATAA 1131 0.4288 MERNSLNSNKNQVMKEYWDCKSQISYGGDDYINGFSWPPRSYTCSFCKREFRSAQALGGHMNVHRRDRARLRQQSPPTTTTHDSHSPMLNLNLNPTSGPGFSTSTLSLLPSSSSSTMLRKPFSASTTLPTFVSPVLSSSSSPPPASTSPSYDLKKWAVDGIMLNPSSTKASESTKMKNIANSLSGFGDCNDPPFAQEVGCKVVKKAEIIRLDLHIGLLSDSKDDLDLELRLEALRYLCRSVVYNEIYISLPSLSFSTTLIPPPPVCFVPVVYGLYLHFASCDFKARYPFKILKVFNFLFVALACRFVKHLSGVPSNLVLVNGNAIMNMHCKRTRVAAYEAGRADDNDQSRPSIGFGSLFHAPHRLIGSLLQSQHTL 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele23g1583 376 MobiDBLite consensus disorder prediction 60 96 - -
Lele23g1583 376 MobiDBLite consensus disorder prediction 73 96 - -
Lele23g1583 376 Pfam C2H2-type zinc finger 42 66 - -
Lele23g1583 376 SMART c2h2final6 42 64 IPR013087 -
Lele23g1583 376 ProSitePatterns Zinc finger C2H2 type domain signature. 44 64 IPR013087 -
Lele23g1583 376 ProSiteProfiles Zinc finger C2H2 type domain profile. 42 69 IPR013087 -
Lele23g1583 376 PANTHER OS07G0101800 PROTEIN 20 231 - -
Lele23g1583 376 Gene3D Classic Zinc Finger 38 90 - -
Lele23g1583 376 SUPERFAMILY beta-beta-alpha zinc fingers 39 68 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele23g1583 Lele-ChrLele23 20135561 20138647 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele23g1583 30 231 C2H2 Transcription Factor Family AT3G23130 42.647 5.13e-32 118
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele23g1583 zf-C2H2_6 8.2e-07 CL0361