Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele23g1542 ATGGTGAATCAGATCGCCGATAAGCCCTCCGAACGAAGCGATTCTAAGTTCAGAGGAGTTCGAAAGAGGAATTGGGGCAAGTGGGTTTCCGAAATTAGACTACCTAACAGCAGGGAGAGGATCTGGTTGGGATCTTATGACTCCGCCGTCAAGGCGGCGCGTGCTTTTGACGCCGCCATGTTTTGCTTACGCGGTCGCTCCGGTAACTTTAATTTCCCCGATAACCCCCCCGACATCGCCGGCGGAAGGTCCATGTCCCCGGCTCAGATTCAAGCCGCCGCGGCCCGTTTTGCCAATTCGGAGCATGGGACGGGTCGATCAGACCAGCCAATGACTCGAGAATTGGCGGAGGAATCTCCGTCTCATTTGCTTTCGGAAGCGACGGTTGTGCGGGTGGAATCTTCGTCCCCCTCGCTCTCTGAGGTGACGGTGCAAACGGACAGTGAAATGACAGTAAACGAATCGGTGTCGGATCTTTTTAAGACGGTCGGATCGGGTAATTACGCGAATGAATACGGGATATTCGCGGGATTTGATGATCTAACGAGTGGATTCTACATACCAGAAATGCCGAGTGTGAATTACGAGGAAGGAAACATGGAGGGGTTGATAATAGACGACTCATTCCTGTGGAATTTTTAA 642 0.5202 MVNQIADKPSERSDSKFRGVRKRNWGKWVSEIRLPNSRERIWLGSYDSAVKAARAFDAAMFCLRGRSGNFNFPDNPPDIAGGRSMSPAQIQAAAARFANSEHGTGRSDQPMTRELAEESPSHLLSEATVVRVESSSPSLSEVTVQTDSEMTVNESVSDLFKTVGSGNYANEYGIFAGFDDLTSGFYIPEMPSVNYEEGNMEGLIIDDSFLWNF 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele23g1542 213 Gene3D AP2/ERF domain 15 74 IPR036955 GO:0003700|GO:0006355
Lele23g1542 213 FunFam Ethylene-responsive transcription factor 2 15 74 - -
Lele23g1542 213 Pfam AP2 domain 15 65 IPR001471 GO:0003700|GO:0006355
Lele23g1542 213 ProSiteProfiles AP2/ERF domain profile. 16 73 IPR001471 GO:0003700|GO:0006355
Lele23g1542 213 CDD AP2 15 75 IPR001471 GO:0003700|GO:0006355
Lele23g1542 213 SUPERFAMILY DNA-binding domain 15 74 IPR016177 GO:0003677
Lele23g1542 213 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 12 145 - -
Lele23g1542 213 PRINTS Ethylene responsive element binding protein signature 39 55 IPR001471 GO:0003700|GO:0006355
Lele23g1542 213 PRINTS Ethylene responsive element binding protein signature 17 28 IPR001471 GO:0003700|GO:0006355
Lele23g1542 213 SMART rav1_2 16 79 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele23g1542 Lele-ChrLele23 19822546 19823187 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele23g1542 15 213 AP2-EREBP Transcription Factor Family AT1G19210 49.020 3.26e-55 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lele23g1542 AP2 5.7e-11 CL0081