Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele23g1540 ATGGCGACCGCTCAGCTCTCAGCATCATCATTGTCTACCATGAATTTGCCCTCGTTCGAATATCTTCAACCTTCGATGGTTCGGTGTTCTGCTGTCAGACACGTAAGAATAGGTGGCCTTACTCAAAGGTCGTTCCGGGGTTTGATTGTTAAAGCCGCAACTGTTGTTGCCCCCAAGTATACCTCAATTAAGCCTTTGGGTGACAGAGTGCTGGTAAAAATTAAGGATTCTGAAGAGAAGACTGATGGTGGTATTTTACTTCCCACAACTGCTCAAACAAAACCTCAAGGCGGTGAAGTGGTTGCTATTGGAGAGGGAAAGACAGTTGGGAAGAGCAAAGTTGACATTGCTGTGAAGACTGGCGCACAAGTTGTGTATTCAAAGTATGCTGGGACTGAGGTGGAGTTTAATGGTTCAAAGCATCTAATACTAAAGGACGATGACATTGTTGGTATCCTTGAAACAGATGATATCAAGGATCTTAAACCTTTGAATGATAGAGTGTTGATCAAGATTTCAGAGGCCGAGGAAAAAACTGCTGGGGGTTTGTTACTGACAGAGGCAACGAAAGAGAAACCATCTACTGGAACGGTGATAGCAGTTGGACCAGGGCCTCTAGATGAGGAAGGCAACAGAAAACCGTTGTCTGTGAGTCCTGGAAACTCTGTTTTGTATTCCAAATATGCTGGGAATGACTTCAAGGGCAAAGATGGTGACTACATTACCTTGAGGGCCTCAGATGTCATGGCAGTCCTTACCTAG 762 0.4488 MATAQLSASSLSTMNLPSFEYLQPSMVRCSAVRHVRIGGLTQRSFRGLIVKAATVVAPKYTSIKPLGDRVLVKIKDSEEKTDGGILLPTTAQTKPQGGEVVAIGEGKTVGKSKVDIAVKTGAQVVYSKYAGTEVEFNGSKHLILKDDDIVGILETDDIKDLKPLNDRVLIKISEAEEKTAGGLLLTEATKEKPSTGTVIAVGPGPLDEEGNRKPLSVSPGNSVLYSKYAGNDFKGKDGDYITLRASDVMAVLT 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele23g1540 253 Hamap Co-chaperonin GroES [groES]. 160 253 IPR020818 GO:0005524|GO:0006457|GO:0140662
Lele23g1540 253 SMART Cpn10_2 62 153 IPR020818 GO:0005524|GO:0006457|GO:0140662
Lele23g1540 253 SMART Cpn10_2 160 252 IPR020818 GO:0005524|GO:0006457|GO:0140662
Lele23g1540 253 SUPERFAMILY GroES-like 61 154 IPR011032 -
Lele23g1540 253 PIRSF Cpn21 1 253 IPR017416 GO:0006457|GO:0046914|GO:1901671
Lele23g1540 253 Gene3D GroES chaperonin 156 253 IPR037124 GO:0006457
Lele23g1540 253 Gene3D GroES chaperonin 55 155 IPR037124 GO:0006457
Lele23g1540 253 Hamap Co-chaperonin GroES [groES]. 62 154 IPR020818 GO:0005524|GO:0006457|GO:0140662
Lele23g1540 253 PRINTS 10kDa chaperonin signature 140 153 IPR020818 GO:0005524|GO:0006457|GO:0140662
Lele23g1540 253 PRINTS 10kDa chaperonin signature 119 131 IPR020818 GO:0005524|GO:0006457|GO:0140662
Lele23g1540 253 PRINTS 10kDa chaperonin signature 63 78 IPR020818 GO:0005524|GO:0006457|GO:0140662
Lele23g1540 253 PRINTS 10kDa chaperonin signature 85 106 IPR020818 GO:0005524|GO:0006457|GO:0140662
Lele23g1540 253 CDD cpn10 62 153 IPR020818 GO:0005524|GO:0006457|GO:0140662
Lele23g1540 253 FunFam 10 kDa chaperonin 159 253 - -
Lele23g1540 253 FunFam 20 kDa chaperonin, chloroplastic 56 155 - -
Lele23g1540 253 ProSitePatterns Chaperonins cpn10 signature. 63 87 IPR018369 GO:0005524|GO:0006457
Lele23g1540 253 PANTHER 10 KDA HEAT SHOCK PROTEIN 159 251 IPR020818 GO:0005524|GO:0006457|GO:0140662
Lele23g1540 253 SUPERFAMILY GroES-like 159 252 IPR011032 -
Lele23g1540 253 ProSitePatterns Chaperonins cpn10 signature. 161 185 IPR018369 GO:0005524|GO:0006457
Lele23g1540 253 Pfam Chaperonin 10 Kd subunit 161 251 IPR020818 GO:0005524|GO:0006457|GO:0140662
Lele23g1540 253 Pfam Chaperonin 10 Kd subunit 63 152 IPR020818 GO:0005524|GO:0006457|GO:0140662
Lele23g1540 253 CDD cpn10 161 252 IPR020818 GO:0005524|GO:0006457|GO:0140662
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele23g1540 Lele-ChrLele23 19809550 19811591 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele23g1540 1 253 Calmodulin-binding Proteins AT5G20720 73.047 5.20e-129 363
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele23g1540 23 19809550 19811591 Lele23g1540 23 19809550 19811591 ECH
Lele21g0507 21 3325043 3326978 Lele23g1540 23 19809550 19811591 hybridization
Lele22g0524 22 3327667 3330285 Lele23g1540 23 19809550 19811591 hybridization