Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele23g1539 ATGAAGGCTTTACCGAATGGATACTTGCCTAATTCTGGCGAAGGAGAAAGAAAAACAATCAACTCAGAGTTATGGCATGCATGTGCTGGACCTTTGGTTTCCTTACCTCCCGTTGGAAGTCTTGTCGTTTATTTCCCTCAAGGACACAGTGAGCAAGTTGCAGCATCCATGCAGAAGGAGGCTGATTTCGTACCCAGTTATCCTAACCTTCCATCCAAGTTAATTTGCATGCTTCACAATGTTGCTCTACATGCTGATCCAGAAACTGATGAGGTCTATGCGCAGATGACACTTCAACCTGTAAACAAATATGACAAGGAAGCATTACTGGCATCAGACATGGGTCTGAAGCAAAGCCGACAGCCTGCTGAATTCTTCTGCAAAACTCTTACAGCTAGTGACACAAGCACTCATGGTGGGTTTTCTGTACCTCGTAGAGCAGCGGAGAAAATATTTCCACCTCTGGATTTTTCAATGCAACCTCCTGCTCAGGAGATTGTTGCCAAGGATTTGCTTGACAATACATGGACATTCAGACATATTTATCGCGGACAACCAAAGAGACATCTGCTGACTACTGGTTGGAGTGTCTTTGTCAGCACAAAGAGACTATTTGCTGGAGATTCTGTTCTTTTTATTAGAGATGGAAAACAGCAGCTTCTTGTGGGTACAAGGCACGCTAATAGACAGCAGCCTGCTCTCTCTTCATCGGTCATATCCAGTGACAGCATGCATATAGGTATTCTTGCTGCTGCAGCTCATGCTGCTGCAAATAACAGCCCATTTACCATATTTTACAATCCGAGAGCTAGCCCTGCTGAATTCGTTATTCCATTGGCCAAGTATAATAAAGCCATGTACACCCAAGTTTCCCTCGGAATGAGGTTTAGAATGATGTTTGAGACTGAGGAGTCAGGAGTTCGTCGATACATGGGTACAATCACAGGGATCAGTGACTTGGATCCTGTGCGGTGGAAAAATTCACAGTGGCGCAATCTTCAGGTTGGATGGGATGAATCAACAGCTGGCGAGCGCCCAAGCAGAGTATCAAATTGGGACATTGAACCAGTAGTAACTCCTTTCTACATTTGCCCACCTCCTTTCTTCAGGCCCAGGTTCTCCAAGCAACCAGGAATGCCAGATGATGAGTTTGACATGGAAAATGCATTCAAGAGGGCTATGCCCTGGATTGGAGATGAATTTGGCATGAAAGATGCCTCAAGTTCAATGTTTCCTGGTTTGAGTTTAGTTCAGTGGATGAGCATGCAGCAGAATAACCAGTTATCTGCTACACAATCAGGAATGTTCCCATCTATGCTTTCATCCAATTCCCTTCATAATAACCTCAGCACTGATGATCCATCCAAATTATTGAGTTTTCAAAACCCTGTCCTCTCTGCATCAAATCTTCAATTTAACAGACCAAATTTACCAAACCAAGTCAACCAATTGCAACAGGCCCCAACATCATGGCCTCAACAGCCGCAGCAACAGCAGCAGATGCAATCATTGATGCAAGCACCTGTAAACCAGCTCCAGCAGCAGAGGCAGCAGCCGCAGCAGCTTCCTGAGCCACAAAATCTGACACAGCAGCAACAGCAGCCCCAATTGCAGCAACAGCGAGTACAACCACCACAGCAGCAGCCCCAGCAGCAGCCATGCCAACAGGCCATTATAAACAATGGGGTGATTGGTTCTAGCCAGATTCCAAATCAGAGTGTGCAACAATCAATAGCTTACTCTCAGCTTCAGCAGCAGCAGTTACTCTCAGCCAGCATGCCCCTTCAGCAGAATATTCAATCGGCTAGCAAGAATGCATTCCCTCTCACAACCTTACCGCAAGATTCACAGTTTCAGCCACAGATAGACCAGCAAGCTACTCTCCTGCAGAGGCAGCAGCAGCAATCCCAGTTGCAGTTATTGCAACAAAGCTTGTCACAGAGGGGCCCGCAACAACCACCAGTGGCTCAACTGCCGCAACAAAACCTGTCAGAACAACAGTTGCAGTTACAGATGCTACAAAAATTGCAGCAGCAGCAGCAGCAATTTCTTTCTCCAACTAGTTCAATTTTGCAGCCTCAGCTACTACAGCAACAGCAAGCACACCTACAAAACCAACAACTACCACAACCGCCTCTATCTCAGCATCAGCCTCAGCAGCTCAGCAACAATGCGTTATCTGCAGAGAAGCTTCTGGTCAGCAACAGCTTTTCTTCTTCACCTCTGATGCAACCACAACAGCTTCCTTTGAACCAAGCCCAGAATACACCAAAACCGCTTGCAACTACCAGAGCTCCTTCTAGTCTTACAGATGGAGATGCCCCATCATGTTCAACTTCGCCATCAACTAATAACTGCCAGGTATCTCCACCAAACCTCCTGAAGAGAAATCAACAAGTGCCGGCAACATTAGGGGGGAGCTTGGTGGTTGAGCCCACTAATAATCTGGTACAGGAGCTGCAGGGCAAGTCTGACATCCAGATCAAACATGAGTTGCCAGGTGTAAAAGGGCCTGACCAGCTAAAGTATAAAGGGACAATAACTGATCAATTGGAAGCCTCTTCTTCTGGAACATCTTACTGTCTTGATCCTTGCAGTGTGCAGCCAAACTTCCCCCTTCCCAATTTCTGCTTGGATGGTGATGTCCAATCACATCCTAGGAACAATCTTCCATTTGCCTCTAATCTTGATGGACTAACGCCTGATACTTTGCTCTTGAGAGGGTATGACTCACAAAAAGATCTTCAAAATCTGCTCTCTAACTATGGTGGTCCTCCAAGAGATATAGAAACTGAGCTGTCTACTGCTGCTATCAGCTCACAGTCATTTGGTGTGCCAAGCATGCCCTTTAAGCCTGGCTGCTCAAATGATGTTGCCATCAATGATACTGGGGTTTTGAATAATGGCTTGTGGGCTAACCAGACTCAACGAATGCGAACATATACTAAGGTTCAAAAACGTGGCTCCGTGGGAAGGTGCATTGATGTCACTCGTTACAAAGGATACGATGAACTCAGACATGACCTGGCTCGTATGTTTGGGATTGAGGGGCAACTGGAAGATCCTCAAAGGACTGACTGGAAACTAGTATATGTAGATAATGAAAATGACATTCTTCTTGTTGGGGATGACCCTTGGGAAGAATTTGTAAGCTGTGTTCAGAGCATAAAGATACTGTCATCTGCTGAAGTACAGCAAATGAGCTTAGCCGGAGATTTAGGTAATGTTCCAATATCCAACCAAGCTTGTAGTGGGACAGATAGTGGTAATGCATGGAGGGGACAATACGACGATAACTCAGCTGCCTCATTTAATCGATAA 3321 0.458 MKALPNGYLPNSGEGERKTINSELWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASMQKEADFVPSYPNLPSKLICMLHNVALHADPETDEVYAQMTLQPVNKYDKEALLASDMGLKQSRQPAEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDFSMQPPAQEIVAKDLLDNTWTFRHIYRGQPKRHLLTTGWSVFVSTKRLFAGDSVLFIRDGKQQLLVGTRHANRQQPALSSSVISSDSMHIGILAAAAHAAANNSPFTIFYNPRASPAEFVIPLAKYNKAMYTQVSLGMRFRMMFETEESGVRRYMGTITGISDLDPVRWKNSQWRNLQVGWDESTAGERPSRVSNWDIEPVVTPFYICPPPFFRPRFSKQPGMPDDEFDMENAFKRAMPWIGDEFGMKDASSSMFPGLSLVQWMSMQQNNQLSATQSGMFPSMLSSNSLHNNLSTDDPSKLLSFQNPVLSASNLQFNRPNLPNQVNQLQQAPTSWPQQPQQQQQMQSLMQAPVNQLQQQRQQPQQLPEPQNLTQQQQQPQLQQQRVQPPQQQPQQQPCQQAIINNGVIGSSQIPNQSVQQSIAYSQLQQQQLLSASMPLQQNIQSASKNAFPLTTLPQDSQFQPQIDQQATLLQRQQQQSQLQLLQQSLSQRGPQQPPVAQLPQQNLSEQQLQLQMLQKLQQQQQQFLSPTSSILQPQLLQQQQAHLQNQQLPQPPLSQHQPQQLSNNALSAEKLLVSNSFSSSPLMQPQQLPLNQAQNTPKPLATTRAPSSLTDGDAPSCSTSPSTNNCQVSPPNLLKRNQQVPATLGGSLVVEPTNNLVQELQGKSDIQIKHELPGVKGPDQLKYKGTITDQLEASSSGTSYCLDPCSVQPNFPLPNFCLDGDVQSHPRNNLPFASNLDGLTPDTLLLRGYDSQKDLQNLLSNYGGPPRDIETELSTAAISSQSFGVPSMPFKPGCSNDVAINDTGVLNNGLWANQTQRMRTYTKVQKRGSVGRCIDVTRYKGYDELRHDLARMFGIEGQLEDPQRTDWKLVYVDNENDILLVGDDPWEEFVSCVQSIKILSSAEVQQMSLAGDLGNVPISNQACSGTDSGNAWRGQYDDNSAASFNR 1106
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele23g1539 1106 Pfam Auxin response factor 252 334 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Lele23g1539 1106 ProSiteProfiles B3 DNA-binding domain profile. 126 228 IPR003340 GO:0003677
Lele23g1539 1106 SUPERFAMILY CAD & PB1 domains 992 1057 - -
Lele23g1539 1106 Pfam B3 DNA binding domain 126 226 IPR003340 GO:0003677
Lele23g1539 1106 Gene3D - 289 360 - -
Lele23g1539 1106 CDD B3_DNA 125 217 IPR003340 GO:0003677
Lele23g1539 1106 MobiDBLite consensus disorder prediction 701 720 - -
Lele23g1539 1106 MobiDBLite consensus disorder prediction 483 554 - -
Lele23g1539 1106 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 17 579 IPR044835 GO:0003677|GO:0006355|GO:0009725
Lele23g1539 1106 FunFam Auxin response factor 124 228 - -
Lele23g1539 1106 MobiDBLite consensus disorder prediction 752 792 - -
Lele23g1539 1106 FunFam Auxin response factor 974 1068 - -
Lele23g1539 1106 Pfam AUX/IAA family 976 1065 IPR033389 -
Lele23g1539 1106 ProSiteProfiles PB1 domain profile. 979 1063 IPR000270 GO:0005515
Lele23g1539 1106 SUPERFAMILY DNA-binding pseudobarrel domain 116 255 IPR015300 -
Lele23g1539 1106 SMART B3_2 126 228 IPR003340 GO:0003677
Lele23g1539 1106 Gene3D - 974 1068 - -
Lele23g1539 1106 Gene3D - 124 227 IPR015300 -
Lele23g1539 1106 FunFam Auxin response factor 289 361 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele23g1539 Lele-ChrLele23 19800289 19807255 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele23g1539 1 487 B3 DNA Binding Superfamily AT1G19220 82.546 0.0 833
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Lele23g1539 AUX_IAA 1.2e-09 CL0072