Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele23g1538 ATGGGGGCAAAAAAAAGCGCGAATTCAAGTGAAGAAGTTATGGAGAAGAAGATTAAGAGGAAGGAGGCCGTGAACAATGAAAGCAAAGACGGCACTATTTTTGCCTCTTGCTCTTTCTCAAGCCTGGGACTGCATCCTACCTTATGCGACGAGCTCCGTGGAAGAATGGGTTTTGAAGTTCCAACCTCTGTACAAGCCCAAGCCATTCCTGTTGTTCTCTCAGGGCGTCATGTTCTTGTTAATGCTGCCACGGGCACCGGGAAGACTGTTGCATACTTGGCTCCAATTATTCATCATTTGCAGAATTTTGGTGATAGAATCCAACGGTCTGATGGGACATATGCGTTGGTTCTTGTGCCAACGCGGGAGCTATGTTTGCAGGTTTATGAAATTCTTCAAAAGTTATTGCATCGATTTCACTGGATTGTACCTGGATATGTAATGGGTGGTGAAAGTAGGTCAAAAGAAAAGGCCAGGTTGCGCAAAGGCATATCCATCCTTGTAGCAACTCCTGGGCGCCTTTTAGATCACTTGAAGAATACATCATCATTCTTGTACACCAATTTGCGTTGGATAATCTTTGATGAAGCTGATAGGATTTTGGAATTAGGATTCGGAAAAGAAATAAAGGAAATACTAGATCATTTGGATACAAAAACAGGCAGTGCTAACCAAAAGAATGCAGTTTCAAGGCACTCTGGAGCTCTGAGACAGAATCTGCTCTTATCAGCTACTTTAAATGAAAAAGTGAATCATCTTGCCAAAATTAGTCTAGAGAATCCTGTGATGATTGGTCTTGATGGCAAAGGGATAGAACAAATTTCAATGAATGAGAGCCTTGGCTCTTCAGAATCTGATGAGGAGAGTGAGGACAATGAAGAGAAGTATCCCAGCAACATGCTGCATACACCTGCTGGAGATTATAAAGTTCCCACACAATTGATTCAGAGATATGTTAAAGTACCTTGCGGTTCACGTCTTGCTGTTCTTCTCTCAATTTTGAAGTATCTTTCTGAAAGGGAAGCTTCGCAAAAGATTGTGGTATTCTTTTCAACATGTGATGCTGTAGACTTTCACTTTTCACTGTTAAGTGAATTCCAGTTTTCTTATCCACAATCAGAAGCAGATGCTAGACAGATGTTTATGGGATGCAAAGTGTTTCGTTTGCATGGGAACATGGATCAGGAGGACAGGAGGAAAACATTTCAGATTTTTAAAACAGAGAAATCAGCTCTGCTGTTTTCTACTGATGTAGCTGCTAGAGGACTGGATTTTCCGAAAGTCAAATGCATTATACAATATGATTCCCCAGGGGAAGCCACTGAATATGTGCATAGAGTTGGTAGAACTGCTCGGCTGGGTGAAAGAGGAGAGTCATTGTTATTTCTGCAGCCAGTTGAAATAGATTATTTACAGGACTTGGAAAAACATGGTGCATCATTAACAGAGTATTCTCTCCTCAAAGTGTTGGATAGTTTCCCACTATATGGTCAAAAGAAGCACATCAAGAATTTTGTTGCCATAGAGTCACATCCCTGGGTCATTTGTCTCCAGAAGGCGCTTGAATCCTTCGTCATGTCTAAGCCCAAAATTGATAAACTTTCCAAGAGGGGATTTTGCTCTTGGGTCCGTGCCTACACAACCCATCGTGGTGAGTTGAAAAAGATATTTATGATCAAGAAACTCCACTTGGGGCATGTAGCGAAAAGCTTTGCACTTAAACAACAACCTTCCTTAGTTGCAAAGTCATACCAGAAGCAAACCAAGAGGAAGAGGTTTCAGAAGCAAACCGGGCGGGTTAAGAAGAGAAAGATCACCAGTGTGACATAA 1830 0.4169 MGAKKSANSSEEVMEKKIKRKEAVNNESKDGTIFASCSFSSLGLHPTLCDELRGRMGFEVPTSVQAQAIPVVLSGRHVLVNAATGTGKTVAYLAPIIHHLQNFGDRIQRSDGTYALVLVPTRELCLQVYEILQKLLHRFHWIVPGYVMGGESRSKEKARLRKGISILVATPGRLLDHLKNTSSFLYTNLRWIIFDEADRILELGFGKEIKEILDHLDTKTGSANQKNAVSRHSGALRQNLLLSATLNEKVNHLAKISLENPVMIGLDGKGIEQISMNESLGSSESDEESEDNEEKYPSNMLHTPAGDYKVPTQLIQRYVKVPCGSRLAVLLSILKYLSEREASQKIVVFFSTCDAVDFHFSLLSEFQFSYPQSEADARQMFMGCKVFRLHGNMDQEDRRKTFQIFKTEKSALLFSTDVAARGLDFPKVKCIIQYDSPGEATEYVHRVGRTARLGERGESLLFLQPVEIDYLQDLEKHGASLTEYSLLKVLDSFPLYGQKKHIKNFVAIESHPWVICLQKALESFVMSKPKIDKLSKRGFCSWVRAYTTHRGELKKIFMIKKLHLGHVAKSFALKQQPSLVAKSYQKQTKRKRFQKQTGRVKKRKITSVT 609
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele23g1538 609 CDD SF2_C_DEAD 314 463 - -
Lele23g1538 609 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 193 201 IPR000629 -
Lele23g1538 609 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 329 501 IPR001650 -
Lele23g1538 609 Gene3D - 323 607 IPR027417 -
Lele23g1538 609 Pfam Domain of unknown function (DUF4217) 518 578 IPR025313 -
Lele23g1538 609 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 75 484 IPR027417 -
Lele23g1538 609 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 69 264 IPR014001 -
Lele23g1538 609 Gene3D - 2 267 IPR027417 -
Lele23g1538 609 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 37 66 IPR014014 GO:0003724
Lele23g1538 609 PANTHER RNA HELICASE 22 539 - -
Lele23g1538 609 Pfam DEAD/DEAH box helicase 62 252 IPR011545 GO:0003676|GO:0005524
Lele23g1538 609 MobiDBLite consensus disorder prediction 278 303 - -
Lele23g1538 609 SMART helicmild6 371 454 IPR001650 -
Lele23g1538 609 FunFam RNA helicase 2 266 - -
Lele23g1538 609 Pfam Helicase conserved C-terminal domain 332 454 IPR001650 -
Lele23g1538 609 CDD DEADc_DDX31 48 265 - -
Lele23g1538 609 SMART DUF4217_3 516 581 IPR025313 -
Lele23g1538 609 SMART ultradead3 57 274 IPR014001 -
Lele23g1538 609 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 32 264 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele23g1538 Lele-ChrLele23 19778640 19783108 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele23g1538 27 491 Eukaryotic Initiation Factors Gene Family AT3G19760 25.641 3.00e-32 127