Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele23g1520 ATGAATGAACCGACCCCGGTGACAGATCATAGGCAACGACACTACCAGGGTCCCACAAATTCAAGAGATTCTTCCCTCTTTCAACTTTGTGCATCGTTTCGATTAGGGTTGGGAGTGTTTCTTTTGGCCTTTTCGCTTGGTAATGGCAGAGTTGGTTTTACTCTCAAATTCATAGTATTTGGAGAAATTTGCTATGCGTGCATGATGTTCAATGCTCAGGGTCCTCCAAGAAAATCTCGTCTCCTTGCCATTCTCAGTGGAAATTCATGTGACAATAAACAAAAGCGGAAACAAGATGATTCTCAGGATCAATCTCCATACCCCATTCCGGAGCTTACTTCAACCGGGCGTCTTGAGGTTAATGTTTTGATCAAACCAACTGCTGATGAACTTCATCGAGTTTTTGAAGCATTGGAGCCAAATTTTGTTTACCTGCAAGGCGAGCAGCTAGAAGATAATGAACAAATTGGGTCCCTAGTATGGGAAGATGTTGATCTGTCTAGCCCAGAAGCCTTATATGGATTATTTTCTTCCAAATTACCTAATACCGTTTATTTGGAAACTCCTAAAGGAGAAAATTTGGCAGAGGCTCTCCATTCTAAGGGAATTCCTTACACAATATATTGGAAAAGTGAATTTTCAAAGTATGCTGCATCACATTTTCGTCAAGCTTTTTTCTCAGTGGCACAAAGTACCTCCAGCCACACATGGGATGCTTTCCAGCTTTCTCTCGCCTCTTTCAGATTATACCGTGTACAAAACAATGTCTCACCTTCAAACAGCATGAAGAGCAGAAGCAGGCTTGAGCCACAAATGTTTGGTGACCCTCCTAACATTGATATTGCTCAATTTGAAGCGGACATGAATGGGGAAGAAAACTCAACTGAGACGATTTCTGCTCTGAAGATTTATGATGATGATGTGAACATGAGATTTCTTGTGTGTGGAGTTCCCTGCATGCTGATAGGGTCTAATTTATTTAGGCTAATCCTGGCAAGATACGGGGATGTAAACTTCACAACCGGACAAGGTAGCTTCATGGTTTTCAGAGTGGATATATCACATGCATATGCCTCTTATATTGTAATATTGACTGGAAGATTGTTGGTTGACTGTGCTCCACCACCTCCTCTTCAGGCAGGGACATTCTCACGTGGTGTGGTGACCATGCGTTGTGATATATCCACGTGTAGTTCTGCTCATATATCCCTCTTGGTGTCTGGTAGTGCTGATACATGCTTTAATGATCAGGCAAGGGTGAACAATGCTATTTTGGAGAATCATATAAAAAAGGAGCTGATTGAGAAGAGTCAGCTAGTTCAGGCATCATTTAATTGTGAACAAAGCAACTTACCTTCCTCTGAGCCTCGAAGGTCAGCCTCAATAGCCTGTGGTGCTAGTGTATTTGAAGTTTGCATGCTGGTTCCTACATGGGCTTCACTGGTCCTGAGACAGCTGGCACCAGAAGTGTCGTTCCGCAGCCTAGTCACGCTGGGAGTTGCCAGTATTCAAGGATTGCCTGTTGCATCATTTAAGAAAGTTGATGCTGAACGTCTCCTTTACTTTTGTTCAAGGCAGTCAGAAAAAAATTGCTTTAGAGACCCCATTTCTTTTGGGCATCCTAGTTGGCTGGTTCCTCCAGCGCCTACTCGAAAAAGATCAGAGCCTTTCTCTGGAATAAAGTCTGTCAATTCTAGTAGCCTTCAAGTCAGTGATAGTGGTAACAATAGACAGAAATTGAACATTGCAGCAATGAGGCCAATCCCTCACTCACATTGTCAGAAGATTCGACCTTTTTCTGGATTGTCCGAGGGGGAAAGGCTTGATGGAGAACGTGGAAAATCAAATCTGTCAATGGTTCCAATAAAGCATAATGGTGTAGGCTCTAATCCAATCACAAATAGGAAATCTTCATCAACATGCTGTCAGGCTCAGCAGATTGTTACATTAAATCCACTACCCATGAAGAAGCATGGTTGTGACAGAGCTCCAATACGGGCTTGTTCAGAAGAGGAATTCTTGAAGGATGTAATGCAGTTTCTTATCCTTCGTGGGCATTCTCGGCTAATTCCACAAGGTGGTCTTCCTGAATTCCCTGAAGCCATTCTGAATGCTAAACGCCTCGATCTTTTTAACTTGTACAGAGAGGTGGTATCTAGAGGAGGGTTTCATGTTGGGAATGGCATCAATTGGAAAGGACAAGTTTTCTCAAAGATGCGGAATCACACTTTGACAAATAGAATGACAGGTGTTGGCAATACACTGAAAAGACATTATGAAGCTTATCTTCTAGAATATGAACTAGCTCATGATGACGTAGATGGAGAGTGCTGCTTGTTGTGCCACAGTAGTGCCGCTGGGGATTGGGTGAATTGTGGGATATGCGGTGAGTGGGCTCACTTCGGCTGTGATAGGCGTCAAGGACTTGGTGCATTTAAGGACTACGCCAAAACTGATGGACTAGAGTACGTTTGCCCACATTGCAGCATCTCAAATTTCAGAAAGAAATCTCAGAAAACTTCAAACGGGTGTTAA 2535 0.43 MNEPTPVTDHRQRHYQGPTNSRDSSLFQLCASFRLGLGVFLLAFSLGNGRVGFTLKFIVFGEICYACMMFNAQGPPRKSRLLAILSGNSCDNKQKRKQDDSQDQSPYPIPELTSTGRLEVNVLIKPTADELHRVFEALEPNFVYLQGEQLEDNEQIGSLVWEDVDLSSPEALYGLFSSKLPNTVYLETPKGENLAEALHSKGIPYTIYWKSEFSKYAASHFRQAFFSVAQSTSSHTWDAFQLSLASFRLYRVQNNVSPSNSMKSRSRLEPQMFGDPPNIDIAQFEADMNGEENSTETISALKIYDDDVNMRFLVCGVPCMLIGSNLFRLILARYGDVNFTTGQGSFMVFRVDISHAYASYIVILTGRLLVDCAPPPPLQAGTFSRGVVTMRCDISTCSSAHISLLVSGSADTCFNDQARVNNAILENHIKKELIEKSQLVQASFNCEQSNLPSSEPRRSASIACGASVFEVCMLVPTWASLVLRQLAPEVSFRSLVTLGVASIQGLPVASFKKVDAERLLYFCSRQSEKNCFRDPISFGHPSWLVPPAPTRKRSEPFSGIKSVNSSSLQVSDSGNNRQKLNIAAMRPIPHSHCQKIRPFSGLSEGERLDGERGKSNLSMVPIKHNGVGSNPITNRKSSSTCCQAQQIVTLNPLPMKKHGCDRAPIRACSEEEFLKDVMQFLILRGHSRLIPQGGLPEFPEAILNAKRLDLFNLYREVVSRGGFHVGNGINWKGQVFSKMRNHTLTNRMTGVGNTLKRHYEAYLLEYELAHDDVDGECCLLCHSSAAGDWVNCGICGEWAHFGCDRRQGLGAFKDYAKTDGLEYVCPHCSISNFRKKSQKTSNGC 844
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele23g1520 844 ProSiteProfiles ARID domain profile. 667 771 IPR001606 GO:0003677
Lele23g1520 844 Gene3D - 664 767 IPR036431 GO:0003677
Lele23g1520 844 SMART ARID_2 664 767 - -
Lele23g1520 844 MobiDBLite consensus disorder prediction 604 634 - -
Lele23g1520 844 MobiDBLite consensus disorder prediction 557 573 - -
Lele23g1520 844 MobiDBLite consensus disorder prediction 554 573 - -
Lele23g1520 844 SUPERFAMILY FYVE/PHD zinc finger 763 831 IPR011011 -
Lele23g1520 844 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 768 837 IPR013083 -
Lele23g1520 844 Pfam ARID/BRIGHT DNA binding domain 670 767 IPR001606 GO:0003677
Lele23g1520 844 MobiDBLite consensus disorder prediction 1 21 - -
Lele23g1520 844 MobiDBLite consensus disorder prediction 92 112 - -
Lele23g1520 844 CDD ARID 669 767 - -
Lele23g1520 844 CDD PHD_ARID4_like 777 828 - -
Lele23g1520 844 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 4 373 843 IPR042293 -
Lele23g1520 844 SUPERFAMILY ARID-like 668 782 IPR036431 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele23g1520 Lele-ChrLele23 19635444 19643134 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele23g1520 69 843 ARID Transcription Factor Family AT3G43240 59.050 0.0 885
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Lele23g1520 ARID 8.2e-14 CL0123