Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele23g1517 ATGGCTTCCTCGTCCACTCTCAAACTCCTCCTCCTCCTTCTCTTCCCAATCTTCCTCTCTGCTACAACAACACTGCACCAAAATCTCACTTCCATAAGATCTTTCTGCAGAACCACGCCATACCCAGAACCTTGCTTCGATTCTTTGAAGCTCGGCATTTCTATTAACATAAGCCCGAACATCCTCACCTATCTGCTTCAGTCTCTGCAAGTTGCCATCTCCGAAGCCACCCACCTCTCTGATCTATTCCAAAATGCTGGAGGCAGCGGCGGTTCTGGTTCTACCAACCTCGTGGAGAAGCAGAGAGGCTCAATCCAAGACTGTAGAGAGCTTCATCTTTCAACCTTGACTTCCCTCAAAAGATCGCTCTCCGGGGTTCGTAATTCTCCCACTTCTTCCAGGAAGCTCGCCGATGCCAGAGCCTACCTCAGCGCCGCCGTCACCAACAAGAACACTTGCTTGGAAGGTCTCGACTCTGCTACAGGCTCCCTCAAGCCTCTTCTCGTGGACTCTACCATCAAAGCTTACAAACATGTCAGCAACTCTCTCTCCATGCTCCCTAAACCAGGTTCCAGAGGCCATAATAATAGGCGGCGTTTGCTGGGAGCTCCGGAGTGGTTGAAGAAGAGAGACCGTCGGATCTTGGATGGGGAAGAATACAACCCAGATGAGATGATTGTGGTGGCGGCGGATGGAACTGGGAACTTCAGCACCATTAATGAAGCTTTGAACTTTGCTCCGAATGATAGCTTGTATAGGACAGTGATCTATGTGAAAGCAGGGGTTTACGAGGAAAATGTGGAGATCCCAAGTTACAAGACCAACGTTGTTCTCCTCGGAGATGGAAGCGACGTCACTCTCGTTACTGGTGACAGAAGTGTGGGTGGTGGGTGGACCACCTTCAGATCTGCAACTCTAGCTGTGTCCGGTGATGGCTTTCTAGCACGAGACATAGCGATAGAGAACAGTGCAGGGCCGGAGAAGCACCAAGCGGTGGCGCTGAGAGTAAACGCAGACTTAACGGCGCTGTACAGATGCGCCGTTTATGGCTACCAAGACACTCTCTACGTCCATTCCTTCCGACAGTTCTACAGAGAATGCGACATCTACGGCACAATAGACTTCATCTTCGGTAACGCCGCCGCCGTTTTTCAAGCATGCGACATCGTTTCGAGAAAGCCAATACCTCACCAGTTCACCGTCATCACGGCTCAATCCCGGGACTCACCGGACGAGGACACCGGAATCTCAATCCAGAATTGCTCCGTCATAGCCACGGAAGATCTCTATACTAACTCTAGCAGCTTCAAGAGCTACCTCGGACGACCATGGAGGCCTTATTCTCGGACTGTGTTCCTTGAGTCTTACATTGATAACTTCGTGGACCCAGAGGGGTGGACGGATTGGTCTAATTCCGATGGCGATGATTCGGAGAGTTTGTACTACGGAGAGTACCAGAATTATGGGCCGGGTTCGGGTACGGGTGGTAGGGTGAATTGGGTTGGGTACCATGTGATGGGGTATGAGGAAGCATATAATTTTACGGTTTCTCAGTTCATTATGGGTGATGCATGGCTTCAGTCCACTTCATTCCCTTATGATGCTGGGATTTGA 1614 0.5062 MASSSTLKLLLLLLFPIFLSATTTLHQNLTSIRSFCRTTPYPEPCFDSLKLGISINISPNILTYLLQSLQVAISEATHLSDLFQNAGGSGGSGSTNLVEKQRGSIQDCRELHLSTLTSLKRSLSGVRNSPTSSRKLADARAYLSAAVTNKNTCLEGLDSATGSLKPLLVDSTIKAYKHVSNSLSMLPKPGSRGHNNRRRLLGAPEWLKKRDRRILDGEEYNPDEMIVVAADGTGNFSTINEALNFAPNDSLYRTVIYVKAGVYEENVEIPSYKTNVVLLGDGSDVTLVTGDRSVGGGWTTFRSATLAVSGDGFLARDIAIENSAGPEKHQAVALRVNADLTALYRCAVYGYQDTLYVHSFRQFYRECDIYGTIDFIFGNAAAVFQACDIVSRKPIPHQFTVITAQSRDSPDEDTGISIQNCSVIATEDLYTNSSSFKSYLGRPWRPYSRTVFLESYIDNFVDPEGWTDWSNSDGDDSESLYYGEYQNYGPGSGTGGRVNWVGYHVMGYEEAYNFTVSQFIMGDAWLQSTSFPYDAGI 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele23g1517 537 CDD PMEI-like_3 34 191 - -
Lele23g1517 537 SUPERFAMILY Pectin lyase-like 223 535 IPR011050 -
Lele23g1517 537 SMART PMEI_2 27 185 IPR006501 GO:0004857
Lele23g1517 537 ProSitePatterns Pectinesterase signature 2. 369 378 IPR033131 -
Lele23g1517 537 Pfam Pectinesterase 226 523 IPR000070 GO:0030599|GO:0042545
Lele23g1517 537 Pfam Plant invertase/pectin methylesterase inhibitor 31 185 IPR006501 GO:0004857
Lele23g1517 537 FunFam Pectinesterase 28 188 - -
Lele23g1517 537 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 32 187 IPR035513 -
Lele23g1517 537 TIGRFAM PME_inhib: pectinesterase inhibitor domain 1 186 IPR006501 GO:0004857
Lele23g1517 537 FunFam Pectinesterase 219 537 - -
Lele23g1517 537 Gene3D Invertase/pectin methylesterase inhibitor family protein 28 188 IPR035513 -
Lele23g1517 537 PANTHER PECTINESTERASE 18 527 - -
Lele23g1517 537 Gene3D - 221 537 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele23g1517 Lele-ChrLele23 19612719 19615019 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele23g1517 24 537 Carbohydrate Esterase AT2G26440 66.350 0.0 711