Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele23g1516 ATGCATATAGTCACCGCCGACACTCTCAAATCAGACACAAACCTCAGACCTCAGTGTTCTACACTTATGGCCATTTCTTCTTCAACCAAAATGGTGTCTGGATTCTGGGTGATGATGCTGATTCTGGGTGTGTTGACGACCACTATTAGTGATGCTCGTGGTGGCAGTGATCTTAAGGGGTTAGGATGCTTGAAGGTTCCGTCTTCAGATTTCAGAAACTCTGTTCAAGGAGTCATGGGTGTTTTGCAGCATGTTATATCTATCATGAATAGGTTTCCCAATGGACGAGATTTTCGTCTCTCCAATGCCATTTCCGACTGCATGGACTTGCTCGATTTGTCTTCTGATGCTCTCCAGTTGTCTGCCTCTGCTACTGAGACTCCAACGGGCCATAGAAACGGCACGGGGAACTTGGGCTCTGATCTGAGAACATGGCTGAGTGCCGCACTTGCAAATCCACAGACATGCATGGAAGGGTTCGAAGGCATCAATAGCTTTATAGATAATATGGTGTCATCTCTTCTAAGCCAAATGATCTCATCGATCCAACAACTCCTAACACAGGTTCACCATGTTCCGGATGAGTTCCCTACAACTACAACTACAAGCAAGGTACGGTTTCCTTCATGGATCAAACCAAGGGACCAGAAGCTTCTACAATCAAATAAGATTAATGCGGATGTTGTAGTAGCAGCAGATGGAACTGGGACTTTCACTAAAGTATCAGATGCAATCGAAGCAGCTCCTGATTATAGCATGAAACGTTTTGTTATATACGTAAAGAGGGGTCTGTACAAAGAGAATGTGGATATCAAGAAGAAGAAATGGAACATCATGATGATTGGGGATGGCATGGATGCCACTGTTATCTCCAGTAATCGTAACTTCAACCAGGGTTGGACAACATTCCGAACGGCTACTTTCAGCGTTAGCGCAAGATCATTCATGGCACGAGACATTACCTTCCAGAACACGGCAGGTCCACAGAATCACCAAGCAGTGGCACTGAGATCAGACTCGGATCTATCAGTGTTCTACCGCTGTGGCATCTATGGCTACCAAGACAGCCTCTTCACACACACAATGCGACAATTCTACAGAGAATGTAGAATAAAAGGCACGGTGGATTTCATCTTCGGAGATGCCACTGCAGTGTTCCAGAAGTGCCAGATTATCGCCAAAAGAGGGCTTCCAGGTCAGAAAAACGTAATCACAGCTCAAGGAAGAAAAGACCCGCACGAACCAACTGGATTCTCCCTCCAATTCTGCAAAATCACTGCAGATTCCGACCTTCTTCCTTTCGTGGGATCAACCGAAACATACCTGGGGAGGCCGTGGAGGGCATATTCTCGAACAGTTTATATGCAAACTTACATGAGCAACTTGGTGAATCGCCGAGGGTGGCTCGAGTGGAATGGCAATGATTCTTCGTTGGACACACTGTTCTATGCGGAGTACATGAACGGCGGCCCAGGGGCTGCTCTGGAGAACCGAGTGAAATGGCCAGGGTTTCATGTGTTGAAGGACGCGAAGGAAGCTTATCCCTTCACGGTGGCTGATTTTATTGATGGGAATTTATGGCTTCCTCACACAGGTGTCATGTACACAGCTGGTTTAAACGCTTGA 1626 0.4656 MHIVTADTLKSDTNLRPQCSTLMAISSSTKMVSGFWVMMLILGVLTTTISDARGGSDLKGLGCLKVPSSDFRNSVQGVMGVLQHVISIMNRFPNGRDFRLSNAISDCMDLLDLSSDALQLSASATETPTGHRNGTGNLGSDLRTWLSAALANPQTCMEGFEGINSFIDNMVSSLLSQMISSIQQLLTQVHHVPDEFPTTTTTSKVRFPSWIKPRDQKLLQSNKINADVVVAADGTGTFTKVSDAIEAAPDYSMKRFVIYVKRGLYKENVDIKKKKWNIMMIGDGMDATVISSNRNFNQGWTTFRTATFSVSARSFMARDITFQNTAGPQNHQAVALRSDSDLSVFYRCGIYGYQDSLFTHTMRQFYRECRIKGTVDFIFGDATAVFQKCQIIAKRGLPGQKNVITAQGRKDPHEPTGFSLQFCKITADSDLLPFVGSTETYLGRPWRAYSRTVYMQTYMSNLVNRRGWLEWNGNDSSLDTLFYAEYMNGGPGAALENRVKWPGFHVLKDAKEAYPFTVADFIDGNLWLPHTGVMYTAGLNA 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele23g1516 541 CDD PMEI-like_4 62 190 - -
Lele23g1516 541 SUPERFAMILY Pectin lyase-like 225 538 IPR011050 -
Lele23g1516 541 FunFam Pectinesterase 221 539 - -
Lele23g1516 541 Gene3D Invertase/pectin methylesterase inhibitor family protein 63 191 IPR035513 -
Lele23g1516 541 PANTHER PECTINESTERASE 83 529 - -
Lele23g1516 541 ProSitePatterns Pectinesterase signature 2. 371 380 IPR033131 -
Lele23g1516 541 Gene3D - 221 539 IPR012334 -
Lele23g1516 541 Pfam Plant invertase/pectin methylesterase inhibitor 99 180 IPR006501 GO:0004857
Lele23g1516 541 SMART PMEI_2 44 185 IPR006501 GO:0004857
Lele23g1516 541 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 81 173 IPR035513 -
Lele23g1516 541 Pfam Pectinesterase 227 525 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele23g1516 Lele-ChrLele23 19605959 19608330 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele23g1516 30 539 Carbohydrate Esterase AT3G43270 57.390 0.0 629