Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele23g1493 ATGGAACTGGACGACTGGGACCTGAGCGCAGAGGATCTTGATTCTCTCGAAAAAGACGCTTTCCAAAAGATTGCTCAACTCCGCAACTCCTCTTGCTCTGTGTCTGTTTCTTCTTCCACTTCTTCCAACACTCAACGATTAAATGTACATCAACAGCATTCTGCAAAACCTCGTGGCAACGACTTGGAACGATCCCCTGAAAAACCCATTTCTGATTCTCGTCCTGAAAGAGTTGAAGCTTTGTCTCCACAATCTAGAGCGTTGCCCTCGTCATTAAAATCAGGAACAAACAACGATGATCACTCAAAAGAAATGCCAAAGGTTTCTGTTAAACTGTTTCTTCATTCCAGCGGTGACATTGCAGCAAAGTTTCAATACAACCAGGCAGTAATAGCTGCAATAAAGAGAGTCCCCAAGTCTACTTGGAATGCAAAAGAAAGGTTATGGATGTTCCCACTATCTTCCTTGTCAGCAGCAGAGAAGGTTCTTGCTGAAATTTCTGGTAATAATGTCCAGGTTGATAACCTAGATCCCCTAGTGCATCGGGCCATCACTGCTGCATCTGCTGTTCCTGATCTTCGAGATCGATATGACAAAATTACTAGCTACATTGAATCGAAACTTTTGCCATTTCAGCGAGAAGGGATTAGGTTTATATTGCAGCATGGAGGGCGGGCTCTTTTAGCTGATGAAATGGGACTAGGGAAAACTTTGCAGGCCATTGCTGTAACTTCATGCATTTCTGAGTCATGGCCTGTGCTCATACTCGCACCATCTTCATTACGGTTGCAATGGGCTTCTATGATTCAACAATGGCTGAATATTCCTTCATCAGATATACTTGTTGTGCTATCTCAAAGTGGTGGATCAAATAAAGGAGGCTTCACTATAGTATCTTCTAATACAAAAAGCAGCATCCATCTAGATGGAGTGTTCAACATCATTTCATATGATTTGGTTCCAAAGCTACAGAATATGCTTATGGCATCCAACTTTAAGGTTGTGATTGCAGATGAGTCGCACTTTCTGAAAAATGCTCAAGCGAAGAGAACTACTTCTTCTCTTCCAGTTATAAAGAAAGCTCAATATGCAATATTGCTTAGTGGAACTCCTGCTTTGTCCCGACCAATTGAACTATTCAAGCAGCTGGAAGCATTGTATCCTGATGTTTATAAAAACGTCCATGAATATGGTAACAGATACTGCAGGGGTGGGATATTTGGAGTCTACCAAGGTGCAAGTAACCATGAAGAATTGCATAATTTGATGAAAGGAACAGTGATGATTCGCAGGCTTAAAAAGGACGTTCTTTCTCAACTTCCTGTAAAGCGCAGGCAACAGGTCTTCCTAGAGTTGGATGCCAAGGACATGAAACAAATCAATGCTTTATTTCGGGAGTTGGAGGTTGTTAAAGCCAAAATTAAGGCATCCAAATCAAAAGATGAGGCGGAAACGCTTAAGTTTACTCAAAAGCATCTTATTAACAAGATATATACTGAATCCGCTGAAGCCAAGATCCCAGCGGTTCTTGATTATATTGGAACTGTGATTGAGGCAGGTTGCAAGTTTCTGATATTTGCCCACCATCAGCCAATGGTAGATTCAATACATGATTTTCTAATTAAAAAGAAGGTGGGTTGCATCCGCATTGATGGCTGCACAGCTGCTGCATCTAGGCAAGCGTTAGTTACGGATTTTCAGGAAAAGGATTCTATCAAGGCAGCTGTGCTATCTATCAAAGCTGGAGGAGTTGGGTTAACTTTAACTGCAGCAAGCACCGTCATTTTTGCGGAACTGTCCTGGACCCCCGGTGACCTAATTCAAGCAGAAGATCGCGCTCATAGAATTGGCCAGGTATCTTCAGTAAACATATACTACTTGCTAGCGAATGACACAGTTGATGACATCATATGGGATGTAGTGCAGAGCAAATTGGAAAATTTGGGACAGATGTTAGATGGCCATGAGAACACCATGGAGGTTGCAGCCAATCAGCCAGGGAATAGCCCTGCCAAGCAGCTAACTCTTGACCCCTTTGTGAAAAGATGTAATAACATGGATGAGCCAGAAGAGCAGCCCGACCCAAAACGCCTCCGAAACTGA 2103 0.4265 MELDDWDLSAEDLDSLEKDAFQKIAQLRNSSCSVSVSSSTSSNTQRLNVHQQHSAKPRGNDLERSPEKPISDSRPERVEALSPQSRALPSSLKSGTNNDDHSKEMPKVSVKLFLHSSGDIAAKFQYNQAVIAAIKRVPKSTWNAKERLWMFPLSSLSAAEKVLAEISGNNVQVDNLDPLVHRAITAASAVPDLRDRYDKITSYIESKLLPFQREGIRFILQHGGRALLADEMGLGKTLQAIAVTSCISESWPVLILAPSSLRLQWASMIQQWLNIPSSDILVVLSQSGGSNKGGFTIVSSNTKSSIHLDGVFNIISYDLVPKLQNMLMASNFKVVIADESHFLKNAQAKRTTSSLPVIKKAQYAILLSGTPALSRPIELFKQLEALYPDVYKNVHEYGNRYCRGGIFGVYQGASNHEELHNLMKGTVMIRRLKKDVLSQLPVKRRQQVFLELDAKDMKQINALFRELEVVKAKIKASKSKDEAETLKFTQKHLINKIYTESAEAKIPAVLDYIGTVIEAGCKFLIFAHHQPMVDSIHDFLIKKKVGCIRIDGCTAAASRQALVTDFQEKDSIKAAVLSIKAGGVGLTLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNIYYLLANDTVDDIIWDVVQSKLENLGQMLDGHENTMEVAANQPGNSPAKQLTLDPFVKRCNNMDEPEEQPDPKRLRN 700
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele23g1493 700 CDD SF2_C_SNF 504 628 - -
Lele23g1493 700 ProSiteProfiles HARP domain profile. 104 178 IPR010003 -
Lele23g1493 700 Coils Coil 645 665 - -
Lele23g1493 700 MobiDBLite consensus disorder prediction 56 75 - -
Lele23g1493 700 Pfam SNF2-related domain 226 488 IPR000330 GO:0005524|GO:0140658
Lele23g1493 700 Gene3D - 470 690 IPR027417 -
Lele23g1493 700 FunFam Chromatin remodeling factor18 181 455 - -
Lele23g1493 700 Gene3D - 184 436 IPR038718 -
Lele23g1493 700 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 330 660 IPR027417 -
Lele23g1493 700 SMART helicmild6 534 617 IPR001650 -
Lele23g1493 700 Pfam Helicase conserved C-terminal domain 513 617 IPR001650 -
Lele23g1493 700 FunFam Chromatin remodeling factor18 466 696 - -
Lele23g1493 700 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 186 431 IPR027417 -
Lele23g1493 700 CDD DEXHc_HARP_SMARCAL1 208 431 - -
Lele23g1493 700 SMART ultradead3 204 397 IPR014001 -
Lele23g1493 700 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 217 389 IPR014001 -
Lele23g1493 700 MobiDBLite consensus disorder prediction 28 104 - -
Lele23g1493 700 PANTHER DNA ANNEALING HELICASE AND ENDONUCLEASE ZRANB3 FAMILY MEMBER 4 688 - -
Lele23g1493 700 MobiDBLite consensus disorder prediction 28 55 - -
Lele23g1493 700 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 509 660 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele23g1493 Lele-ChrLele23 19456437 19465649 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele23g1493 507 657 RAD5 or RAD16-like Gene Family AT1G11100 34.437 2.43e-17 84.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Lele23g1493 SNF2_N 6.9e-29 CL0023
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele23g1493 23 19456437 19465649 Lele23g1493 23 19456437 19465649 ECH
Lele21g0551 21 3639990 3649086 Lele23g1493 23 19456437 19465649 hybridization