Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele23g1475 ATGGGATTTTTGTACGAGTTCCTCACTAGGCATGGGATTTTTGTACGAGTTGTGGATAATTATGATAATGGTAATGGAGAAAGAGCAGGTGAGAAGAGTAATTTGAGGAGTGAGATTTTGAGCAGAAGGGTAAGGCAAGCTCTGGGACGCAGCACTGAGCTTCATGCTTTACCCATGGCTTCAATTTCTCTCTCCTTCTCTTCTTCCCTCCTTCCCTCTCCAATTTCTCAGGACAAATGCAAGATCCGCCATTTCCCTAACCCCGTAACCCCCAACCCGCGTCTTCGGATTATCCGCTGCGCAACTGCGGCTCCATCGTCGAAAACTTCTTCTTCTTCGTCCTCTTCGGTCGCTAAAAAGAGGCACTGGAAAATAGGTGAATTTCCGGGTGCTTCTGAAACTTCTTTACCTGGCCGTGAGAGGAGGGCTCCGATTAAGAATTTGAAGAAGAAGTTGGACCGAAAGGTCAAGGCTAAGGCCTGGGTCAACACTGTCACTGAATGCTTGGCTGATAGAATTGATAAAAAACAGTGGCTTCAAGCTCTTGAGGTATTCGAGATGCTTAGAGAGCAATCCTTTTACCAACCAAAAGAAGGGACTTACATGAAACTCATTGTATTGCTTGGAAGATGTGGCCAACCTCAACGTGCCCATCAGCTTTTCAACACTATGGTTGAAGAAGGTTGTCAGCCTACGTCTGAGCTTTACACGGCTTTGCTCGCAGCGTACTGTCGCAACAACCTTATTGATGAAGCATTTTCAACTCTTAATGAGATGAAGAACCTCCCTCTCTGCCAGCCTGATGTTTACACTTACAGTACTTTAATTAAAGCTTGTGTGGATGCTTTGAAATTTGATTTGGTTGAGTCGATGTATGAAGAGATGGCGGAAAGGTCCATCACCCCGAACACTGTCACTCAAAACATTGTCTTAAGTGGATATGGCAAGGCAGGGAAGTATGATCAGATGGAGAAAGTGCTGTCAAATATGCTGGATAGCACAACATGCAAGCCTGATGTGTGGACAATGAACACAATCATCAGTGTCTTTGGTAACAAGGGCCAGATTGATATGATGGAGAGATGGTATGAAAAGTTTCGTAATTTCGGAATAGAACCGGAAACACGCACTTTTAATATTTTGATTGGTGCTTATGGAAAGAAAAGAATGTACGACAAAATGTCCTCTGTGATGGAGTATATGCGCAAGCTTCAATTTCCTTGGACAACTTCAACTTACAACAATGTGATTGAGGCATTTGCAGCCGTCGGTGAGGCTAAACACATGGAATATACATTTGATCAGATGCGTGCCGAGGGTATGAAAGCCGATACCAAGACTTTCTGCTGCCTTATCAATGGTTATGCCAATGCAGGTCTCTTCCATAAAGTAATTAGCAGTGTTTACTTGGCTAAGAAGTTTGAGATACCCGAGAATGTCTCATTTTACAATGCCATCATCTCCGCATGTGCAAAGGCCGAGGATTTGATCGAAATGGAGCGAGTTTTCAACCGTATGAAGGATAACCTATGTCAACCAGATGACACTACATACTCTATCATGATCGAGGCGTATGGAAAAGAAGGTATGCGTGACAAAATTTACTTTCTGGAGCAGGAAAAGCAGACGATCACTGAGGATATAAAAACTGAACAAGCTAATGAATGA 1668 0.4347 MGFLYEFLTRHGIFVRVVDNYDNGNGERAGEKSNLRSEILSRRVRQALGRSTELHALPMASISLSFSSSLLPSPISQDKCKIRHFPNPVTPNPRLRIIRCATAAPSSKTSSSSSSSVAKKRHWKIGEFPGASETSLPGRERRAPIKNLKKKLDRKVKAKAWVNTVTECLADRIDKKQWLQALEVFEMLREQSFYQPKEGTYMKLIVLLGRCGQPQRAHQLFNTMVEEGCQPTSELYTALLAAYCRNNLIDEAFSTLNEMKNLPLCQPDVYTYSTLIKACVDALKFDLVESMYEEMAERSITPNTVTQNIVLSGYGKAGKYDQMEKVLSNMLDSTTCKPDVWTMNTIISVFGNKGQIDMMERWYEKFRNFGIEPETRTFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTTSTYNNVIEAFAAVGEAKHMEYTFDQMRAEGMKADTKTFCCLINGYANAGLFHKVISSVYLAKKFEIPENVSFYNAIISACAKAEDLIEMERVFNRMKDNLCQPDDTTYSIMIEAYGKEGMRDKIYFLEQEKQTITEDIKTEQANE 555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele23g1475 555 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 197 231 IPR002885 -
Lele23g1475 555 Gene3D Tetratricopeptide repeat domain 332 402 IPR011990 GO:0005515
Lele23g1475 555 Gene3D Tetratricopeptide repeat domain 264 331 IPR011990 GO:0005515
Lele23g1475 555 Gene3D Tetratricopeptide repeat domain 139 263 IPR011990 GO:0005515
Lele23g1475 555 Gene3D Tetratricopeptide repeat domain 403 464 IPR011990 GO:0005515
Lele23g1475 555 Gene3D Tetratricopeptide repeat domain 465 544 IPR011990 GO:0005515
Lele23g1475 555 Pfam PPR repeat family 236 280 IPR002885 -
Lele23g1475 555 Pfam PPR repeat family 338 385 IPR002885 -
Lele23g1475 555 Pfam PPR repeat family 479 525 IPR002885 -
Lele23g1475 555 Pfam PPR repeat family 410 457 IPR002885 -
Lele23g1475 555 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 374 408 IPR002885 -
Lele23g1475 555 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 303 338 IPR002885 -
Lele23g1475 555 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 232 266 IPR002885 -
Lele23g1475 555 TIGRFAM PPR: pentatricopeptide repeat domain 200 232 IPR002885 -
Lele23g1475 555 TIGRFAM PPR: pentatricopeptide repeat domain 342 373 IPR002885 -
Lele23g1475 555 TIGRFAM PPR: pentatricopeptide repeat domain 377 405 IPR002885 -
Lele23g1475 555 TIGRFAM PPR: pentatricopeptide repeat domain 483 514 IPR002885 -
Lele23g1475 555 TIGRFAM PPR: pentatricopeptide repeat domain 235 261 IPR002885 -
Lele23g1475 555 TIGRFAM PPR: pentatricopeptide repeat domain 412 444 IPR002885 -
Lele23g1475 555 TIGRFAM PPR: pentatricopeptide repeat domain 270 304 IPR002885 -
Lele23g1475 555 TIGRFAM PPR: pentatricopeptide repeat domain 305 340 IPR002885 -
Lele23g1475 555 Pfam PPR repeat 308 332 IPR002885 -
Lele23g1475 555 Pfam PPR repeat 200 229 IPR002885 -
Lele23g1475 555 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 409 443 IPR002885 -
Lele23g1475 555 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 339 373 IPR002885 -
Lele23g1475 555 PANTHER EXPRESSED PROTEIN 133 550 IPR044179 GO:0003729
Lele23g1475 555 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 479 513 IPR002885 -
Lele23g1475 555 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 268 302 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele23g1475 Lele-ChrLele23 19320813 19323588 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele23g1475 342 553 Glycosyltransferase AT1G05670 23.288 8.98e-13 69.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele23g1475 23 19320813 19323588 Lele23g1475 23 19320813 19323588 ECH
Lele21g0569 21 3781007 3782893 Lele23g1475 23 19320813 19323588 hybridization
Lele22g0577 22 3778745 3787849 Lele23g1475 23 19320813 19323588 hybridization