Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele23g1466 ATGCCATTTTATCCAGAAGACGAGGATGAAAAGATGGCTCCTCTTTCTGATTATTTACTTCTGTGTATATGTTTATTTGAGGTTCATTCGTTGATTACTGTGACGCGTCTCAAAAAATACATATTATCCATGGCAACAGCTGAGGCACCTCCTGCTTCTCTTGGTCCCCGATATGCACCTGATGACCCCACTCTCCCAAAACCTTGGAAGGGATTGATTGATGGAAGTACGGGTCTATTATACTATTGGAACCCTGAAACCAACATCACCCAGTATGAAAAACCTACAGCTCCGCCACCATCCATGCCTGCTGGGCCACCTCCTGCAGTTTCTACACCCAAGTTGGCTCCCATACCAGTGGCTCATTCAGTGCAACCTGGTGGGGTGGTGGCACAGCATGGGCAGCAGTTACTACAAACCTCTCACCAACAAGGACAGCAAATGAGCCACCTATCCCAACAGCATAGTCCCCAGGTAGCACAGGTCGCTAAGCAGCAGCCTTCTCAAGCAGCACAAGCTGGACAACAACAGAGTTCACAGTCACTGCAATCTATGCCACGGCTAGGTTTGCAACAAGTCAGGCAGCAGCAGATGTTTCAGCCTATGAGTCAGCAAATTCAACCACAGCAAATGCATCATCAGATGCCACAACAAGCCATCCAGTCACAACCTTTTGGGCAAGGAGCCACCCAGGATCATGGTTCATATATGGGACAGCCACAAGCTCATCAATTCTGTCACCAGAACCTACATTACATGCCATATTCACAAAGCATGCACTCAAATGGGCATCAAAGTTCCCAGCCAATCCAGCATAACATGCATGGTCAGCCATTGGAAAATCTACAGGAGTTTAAAGCAGCATTCCAAAAGGTAGAGGATGTAGATTTTAAAAATGGAGGCCAAGTTGGACTTTCACCATCCCAGTATCAACAAAAGAGTGGCTTGCCTTTGCAAGGCAATCAGCAGAACATTCCTGCTGGAATTTCCTCTGTCCAGTTGCCACGTGTTGGTGTTAATGCTGGCCAAGCACAACCATTTGGTGGTATGCAACAGCCTTCTGCAGCAATGCAATCGCAGCAGGGTAGTGCTGATTTAGTTTATCAACATGGTCATAGCTTTCAAAACCAGGTGGGCCCAGGAATGATGCATGGTCAGCCATCTAATGTCCATCCTGTTGACCTAAAGATGGGACATGAGGATAACTTACGCGGTAGAGCTGTGAATGAATATTACTACAACTCTGGCAAGGAGATGCCACCAGGGGATTCTCAGCAGCCAGATATTGCACCAATACCCATTTCAAGAAATCAGCAGGCTTATCAGCAGGATATGAGGATTGGCGGTTCCCATTTTCAAAATGCAATGCCCGGTGGGAATGGGTTAAATGGTGTCCCAGGGCATAGTATGCATAATGTGTTTAATCCTCCAATTGGAGGCCCTCCACCAGTTGCTAGTAACTCTTTGACTACGCCTCATGTCACTGATCTGTCACCTGCTGAAATTTACCGTCAGCAACATGAAGTTACAGCAACGGGCGACAATGTTCCTCCCCCCTTCATGACATTTGATGCTGCTGGGTTTCCTTCAGAGATTTTGAGAGAGATCTATTCTGCGGGCTTCTCAACTCCAACACCTATTCAAGCTCAAACATGGCCTGTTGCCCTACAGGGTAGGGACATAGTGGCTATTGCCAAAACAGGCTCTGGAAAAACATTGGGATATTTAATGCCAGCATTTATGATTCTTAGACAGAGGCATAACAACCCCCTGAATGGCCCCACAGTGTTGGTATTGGCTCCAACACGTGAACTTGCGACACAGATTCAAGACGAAGCCATAAAATTTGGCCGATCTTCACTGTGCTTGTATGGTGGGGCACCAAAAGCTCTTCAGCTGAAAGAGCTAGACTGTGGAGCAGACATTGTTGTTGCTACACCAGGCCGGCTCAATGACATACTTGAAATGAAGAAAATCGACTTTGGGCAAGTCTCACTTCTTGTGCTTGATGAGGCTGACCGAATGCTTGATATGGGTTTTGAGCCTCAAATCCGTAAGATTGTGAATGAGATACCACCACGTAGGCAAACTCTTATGTACACAGCGACATGGCCAAAAGAAGTACGAAAAATTGCTGGCGATCTCCTTGTTAATCCTGTCCAAGTTAATATCGGAAATGTTGACGAGCTTGCTGCAAATAAAGCTATCACACAGTATGTTGAAGTTGTCCCACAAATGGAGAAACAAAGGCGTTTAGAGCAGATCATCAGATCCCAAGAACGAGGTTCTAAGGTCATAATATTTTGCTCCACAAAGAGGTTATGTGATCAACTTGCCCGTAGCATTGGCCGTAATTTTGGTGCAGCTGCAATCCATGGGGACAAGTCTCAAGGTGAAAGAGACTGGGTTTTGAATCAGTTTAGGACTGGGAAGTCACCAGTTCTAGTTGCCACTGATGTTGCTGCTCGTGGGCTTGACATTAAGGATATAAGGGTGGTGATCAACTATGATTTCCCTACTGGAATTGAGGACTATGTACACCGTATTGGTCGAACAGGAAGGGCTGGAGCCACTGGATTGTCATACACCTTTATCTCTGAGCAGGACTGGAAACATGCTGGTGACTTGATTAAAGTTTTGGAGGGTGCTAACCAGCTTGTGCCTCCAGAGTTACGGCAGATGGCTTTGCGTGGGCCATCTAACTTTGGAAAGGATCGGGGTGGAATGAGCCGTTTTGGCTCTAGTGGTGGCCGTTGGGAGTCTGGTGGCCATGGTGGCATGAGAGATGGTGGCTTTGGCAGTCGTGGTGGCATGAGAGATGGTGGCTTTGGTGGTCGTGGTGGCATGAGGAATGGTGGTGGGTTTGGGGGTCGTGGGGGCATGAGGGATGGTCTTGGTGTTCAAGGGGGAAGAGGTGATTTCTTTCCTGGTAGGAGCAACAGGGGTCGGGGAATGGGTGGCCCTCGAGGCGGTCATGTTGGTTGGGGTAGGGGTGAACGTGACTCTCATGATCGTTACAACATGGATGGGCGAGGACGCGGGCGTGGACGTTTTGACAACAGAAGAGATGTTAGTTACAGGAATAGAGGCAGAAGTCGCAGCCCTGAAAGGGTTCGAACTTGGGATTATAGCAGAAGTCGCAGTAGAAGCAGAAGTAGAACTCGAAGCAGGAGTAGGAGCTGGAGTAGGGGTCGAAGTCGCAGCTGGTCTCGTGGCCGGAGTCGCAGTTACAGCCGTAGCTTAAGCCGGAGTTGGAGTCCCTGTCGCAGCCATGGCCGCAGGAGTCGAAGTTACAGCCGCAGTCGTAGTCGAAGCCACAGTTACGATAGACGTGATAGGCCAGATCAACATATTTCTGATCAGAACGAGCATAGAGCACAAGAAGCAGAAGCTTCTGAACCAAGAACATTCTCCACGTCTCCCAGGTCCCAGGGGAACTCACTTCCGGGAACTGAACACGTGGAGCAGCCACCGGTTGTTAGTAGTGTTGAGACAGTTAATGCAGGGGCTGTAGTTGACCTTTGCCTTGAATCAGCTCCTAATGCCTAG 3549 0.4844 MPFYPEDEDEKMAPLSDYLLLCICLFEVHSLITVTRLKKYILSMATAEAPPASLGPRYAPDDPTLPKPWKGLIDGSTGLLYYWNPETNITQYEKPTAPPPSMPAGPPPAVSTPKLAPIPVAHSVQPGGVVAQHGQQLLQTSHQQGQQMSHLSQQHSPQVAQVAKQQPSQAAQAGQQQSSQSLQSMPRLGLQQVRQQQMFQPMSQQIQPQQMHHQMPQQAIQSQPFGQGATQDHGSYMGQPQAHQFCHQNLHYMPYSQSMHSNGHQSSQPIQHNMHGQPLENLQEFKAAFQKVEDVDFKNGGQVGLSPSQYQQKSGLPLQGNQQNIPAGISSVQLPRVGVNAGQAQPFGGMQQPSAAMQSQQGSADLVYQHGHSFQNQVGPGMMHGQPSNVHPVDLKMGHEDNLRGRAVNEYYYNSGKEMPPGDSQQPDIAPIPISRNQQAYQQDMRIGGSHFQNAMPGGNGLNGVPGHSMHNVFNPPIGGPPPVASNSLTTPHVTDLSPAEIYRQQHEVTATGDNVPPPFMTFDAAGFPSEILREIYSAGFSTPTPIQAQTWPVALQGRDIVAIAKTGSGKTLGYLMPAFMILRQRHNNPLNGPTVLVLAPTRELATQIQDEAIKFGRSSLCLYGGAPKALQLKELDCGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNEIPPRRQTLMYTATWPKEVRKIAGDLLVNPVQVNIGNVDELAANKAITQYVEVVPQMEKQRRLEQIIRSQERGSKVIIFCSTKRLCDQLARSIGRNFGAAAIHGDKSQGERDWVLNQFRTGKSPVLVATDVAARGLDIKDIRVVINYDFPTGIEDYVHRIGRTGRAGATGLSYTFISEQDWKHAGDLIKVLEGANQLVPPELRQMALRGPSNFGKDRGGMSRFGSSGGRWESGGHGGMRDGGFGSRGGMRDGGFGGRGGMRNGGGFGGRGGMRDGLGVQGGRGDFFPGRSNRGRGMGGPRGGHVGWGRGERDSHDRYNMDGRGRGRGRFDNRRDVSYRNRGRSRSPERVRTWDYSRSRSRSRSRTRSRSRSWSRGRSRSWSRGRSRSYSRSLSRSWSPCRSHGRRSRSYSRSRSRSHSYDRRDRPDQHISDQNEHRAQEAEASEPRTFSTSPRSQGNSLPGTEHVEQPPVVSSVETVNAGAVVDLCLESAPNA 1182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele23g1466 1182 Gene3D - 59 99 - -
Lele23g1466 1182 SMART ultradead3 540 739 IPR014001 -
Lele23g1466 1182 MobiDBLite consensus disorder prediction 92 115 - -
Lele23g1466 1182 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 668 676 IPR000629 -
Lele23g1466 1182 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 496 895 - -
Lele23g1466 1182 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 552 722 IPR014001 -
Lele23g1466 1182 MobiDBLite consensus disorder prediction 1073 1088 - -
Lele23g1466 1182 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 592 871 IPR027417 -
Lele23g1466 1182 Pfam Helicase conserved C-terminal domain 748 856 IPR001650 -
Lele23g1466 1182 MobiDBLite consensus disorder prediction 137 194 - -
Lele23g1466 1182 FunFam ATP-dependent RNA helicase RhlB 726 898 - -
Lele23g1466 1182 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 751 895 IPR001650 -
Lele23g1466 1182 CDD WW 66 96 IPR001202 GO:0005515
Lele23g1466 1182 SMART ww_5 64 97 IPR001202 GO:0005515
Lele23g1466 1182 Pfam WW domain 65 95 IPR001202 GO:0005515
Lele23g1466 1182 ProSitePatterns WW/rsp5/WWP domain signature. 69 95 IPR001202 GO:0005515
Lele23g1466 1182 Gene3D - 727 897 IPR027417 -
Lele23g1466 1182 SMART helicmild6 772 856 IPR001650 -
Lele23g1466 1182 CDD DEADc 532 722 - -
Lele23g1466 1182 MobiDBLite consensus disorder prediction 96 114 - -
Lele23g1466 1182 SUPERFAMILY WW domain 57 99 IPR036020 GO:0005515
Lele23g1466 1182 ProSiteProfiles WW/rsp5/WWP domain profile. 63 97 IPR001202 GO:0005515
Lele23g1466 1182 MobiDBLite consensus disorder prediction 994 1049 - -
Lele23g1466 1182 MobiDBLite consensus disorder prediction 897 1161 - -
Lele23g1466 1182 Gene3D - 497 726 IPR027417 -
Lele23g1466 1182 MobiDBLite consensus disorder prediction 1132 1151 - -
Lele23g1466 1182 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 521 549 IPR014014 GO:0003724
Lele23g1466 1182 MobiDBLite consensus disorder prediction 1102 1131 - -
Lele23g1466 1182 MobiDBLite consensus disorder prediction 1050 1072 - -
Lele23g1466 1182 Pfam DEAD/DEAH box helicase 545 711 IPR011545 GO:0003676|GO:0005524
Lele23g1466 1182 CDD SF2_C_DEAD 736 865 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele23g1466 Lele-ChrLele23 19286525 19292774 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele23g1466 509 894 Eukaryotic Initiation Factors Gene Family AT3G19760 33.929 1.08e-63 221