Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele23g1428 ATGACATCAAGCATAGTACTCGAGATTCAAGGACTCCGAGTTCCAGCTCACTCCGAGTTCGTTACGTCCAATTTCACGGTGACTCTGGACAACAAGTCTTCTTGGTCGTCTTCTCCTGGAGTTATAGGGGGTCCCTCACATTTCTCCGATGATCCCTTGAACCTTGACAATGCGGGACGCGGCCCATCTGACTTCCGCTTTGCCGGAGCCGGCGGTCACTATATTTCTCCGGTCAGTCCGCCGCGTCGGTCTCCTGGCAGAGGCGATCGGTTTGATGGTAGAAGTTTTGCGAAACCTTTTGTTGCATCTATACCCCGGACAGCTACTGAAGAAGATATTCGCCCTTTGTTTGAGGAGCATGGGAACGTGCTTGAGGTTGCTTTGATTAAAGATAGAAAAACAGGGTCCATTGAGAGGCTGATGGAAGAGACTAAGCTCATCTTCATCTCAGTTTGTTTTTGCAACAAGTCCAGGCTTGTTGGTTTGGGTAGCCACCCTTTTTTGTCCTCATCCTGTCATAATCATAGGTCTGTGATTGCACTTGGAGATACATTAGAAGTGGAGCCATATTGTTCATGTGAAATCAGATCTTCTCTGTTGGATCAGTACTTGGTTGAATCTGCTGCTAGCCATGAAGAATTGATTATTGAAAAGGCAATTCTTGCTGGTTTGATTGCATTGATAAATTACACAACCTTGTGCACAAGGAACCTAGGGAAGTTGCAAAGTGAAGGTTATTGTTTCATTAAGTATGCTACTTCAGAAGAAGCTGATCAGGCAATTAGAGCATTGCATGATCAACATACTCTTCCTGGAGTGAACTGTGTTCTTTTGATGCTAAATACTACATGTGCAGCTGGGTACAAATTATATGTGGGCTCTTTGAACAAACAGGCTACGGTAGAGGAAATTTTCTCAAAATATGGACAGCTTGAATTTGCATATATCATCTGTGATGAGATGGAGCAAAGCCGTGGATACGGTTTTGTTAAGTACTCTTGTAGAAATATGGCACTGGAAGCTATAAAGGCACTTAATGGAATTTATACAATGAGAGGTTGTGATCTACCATTAACTGTCCAATTTGCTAATCCAAAGAAACATCGGCAAGGAGACTCAAGTCCTCCATCCTATGTTAATGAACCTATGGGTGATCTTATCCCTCCTCCTAATGCTTGGCATCCTATGCATCTGCCGAATACGGTACCATCCTCTCATTGTGGTCCTCATGGTGTAGTGTCTTCACTGCTTCCAAGATCTAGCGTCCCTGCAATGCCTATGAATCCAGTAAGTATGATATGATACACGACCTGCCTCCTTCCCCTCCATTCGTACCCTCAAGCTTCAATGACCTACTTACAGAAGCCAATGTCTCTTTCATCAGTTAGCCAGGTTGGTCAGCCTCAACCGTTTTTGTCAGGGGAGCCTCTTCCTTCACAGCAGGTACCTGGCATAAGTGGACAGTTACCAGCTTCCCATCGTCAAACTCAACAGAATGTTCCATCTGCTGCAATGCCTCAGAGGCCTCTTGATATCAGCTGGCAATGTAATAAAGCTGTAAATGCTGCAAACCAGCAGCAACTTCCCACCGCGTTGCAGCAGCAGCAGCCACTTCAGCCTCTTCAGCAGTCCCCATCTCAGTTGACTCAGATGTGGTCGCAACAAGCTCAGATTTTGCAAGCAAGCTTTAATTCATTTCAGCAGACCATTTCCCAGATTGAACAAGTACAAATGACGCAACCATCTAGTCAAGATTTAGCATTGCAGCAAAATGCAGAAGCTGCTAAAAAGCAGTGGGATAAACCAGAGGAGTTAGCATTATCTGAAAGGCAAAAGCAACAGCAAATGCCAATTTCTCACATGTATCAACCTCAGTTACAACCACCAGCATTATCTGCCCTGACAGCTCCCCAGTCGCAACAGGTGCTGCCTCAAGGTCAGGTTCAGATTCTCCACCAGCAACAGATACAGAAGCCTTCTTTATCTTCTGTAAGTGTCACTATGAATTCTTTCATTGTGGTGTTGAAAGAAGATTCTGTTATGTTGACATTGTTTCCGGATTTCTAG 2067 0.4465 MTSSIVLEIQGLRVPAHSEFVTSNFTVTLDNKSSWSSSPGVIGGPSHFSDDPLNLDNAGRGPSDFRFAGAGGHYISPVSPPRRSPGRGDRFDGRSFAKPFVASIPRTATEEDIRPLFEEHGNVLEVALIKDRKTGSIERLMEETKLIFISVCFCNKSRLVGLGSHPFLSSSCHNHRSVIALGDTLEVEPYCSCEIRSSLLDQYLVESAASHEELIIEKAILAGLIALINYTTLCTRNLGKLQSEGYCFIKYATSEEADQAIRALHDQHTLPGVNCVLLMLNTTCAAGYKLYVGSLNKQATVEEIFSKYGQLEFAYIICDEMEQSRGYGFVKYSCRNMALEAIKALNGIYTMRGCDLPLTVQFANPKKHRQGDSSPPSYVNEPMGDLIPPPNAWHPMHLPNTVPSSHCGPHGVVSSLLPRSSVPAMPMNPVSMIXYTTCLLPLHSYPQASMTYLQKPMSLSSVSQVGQPQPFLSGEPLPSQQVPGISGQLPASHRQTQQNVPSAAMPQRPLDISWQCNKAVNAANQQQLPTALQQQQPLQPLQQSPSQLTQMWSQQAQILQASFNSFQQTISQIEQVQMTQPSSQDLALQQNAEAAKKQWDKPEELALSERQKQQQMPISHMYQPQLQPPALSALTAPQSQQVLPQGQVQILHQQQIQKPSLSSVSVTMNSFIVVLKEDSVMLTLFPDF 688
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele23g1428 688 Gene3D - 219 279 IPR012677 -
Lele23g1428 688 Gene3D - 281 373 IPR012677 -
Lele23g1428 688 MobiDBLite consensus disorder prediction 463 489 - -
Lele23g1428 688 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 291 354 IPR000504 GO:0003723
Lele23g1428 688 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 100 136 IPR000504 GO:0003723
Lele23g1428 688 MobiDBLite consensus disorder prediction 584 631 - -
Lele23g1428 688 PANTHER RNA BINDING PROTEIN 74 623 - -
Lele23g1428 688 SUPERFAMILY RNA-binding domain, RBD 287 377 IPR035979 GO:0003676
Lele23g1428 688 MobiDBLite consensus disorder prediction 38 92 - -
Lele23g1428 688 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 288 365 IPR000504 GO:0003723
Lele23g1428 688 SMART rrm1_1 289 361 IPR000504 GO:0003723
Lele23g1428 688 SMART rrm1_1 98 278 IPR000504 GO:0003723
Lele23g1428 688 MobiDBLite consensus disorder prediction 609 631 - -
Lele23g1428 688 MobiDBLite consensus disorder prediction 365 384 - -
Lele23g1428 688 SUPERFAMILY RNA-binding domain, RBD 89 268 IPR035979 GO:0003676
Lele23g1428 688 Gene3D - 98 161 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele23g1428 Lele-ChrLele23 18989519 19000040 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele23g1428 242 347 Eukaryotic Initiation Factors Gene Family AT4G34110 29.310 2.86e-08 55.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele23g1428 23 18989519 19000040 Lele23g1428 23 18989519 19000040 ECH
Lele21g0612 21 4097034 4102065 Lele23g1428 23 18989519 19000040 hybridization
Lele22g0612 22 4024808 4040339 Lele23g1428 23 18989519 19000040 hybridization