Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele23g1412 ATGGGAACTCCACCACCAGAAGAGCTTCTCAAGAAGATCGAGGACCTCGAGGTGGGTCACGCACACCTCAAGCAAGAAATGTCCAAGCTCAAGCTCTCGGGCGCCAGCGATGCTCGGGCCGAGCAGAGCCATCATCGCCAGAGGTCGCACTCGATATCGCCGCAGCGTTCGAGATTGAACAGAGCCGGTGGCGGCGGATTCGATGGACCGGCTTCGTGGAAGAAAGGTTCGACCTCGTTTAAACATTCATCACCGCTTCAGAGGGAAAGCCGTAGTAGTGATCCTCAAAATGATGGAGATGGTGACGTTGGAAGAGGCCCTTCAGCTGTGAATTTTACTGATAAGCAGTATCTCAATATTTTGCAGTCAATGGGGCACTCTGTTCACATATTGGATCTTGATGGTCGTATAATATACTGGAACCGTAGTGCTGAACATCTATATGGTTATCCAGCGGAAGAAGCCCTTGGTAAGGATGGCATTGAGCTGATTGTAGACCCCAGGGATTTTGCCCTAGCCAATGATATAGTCAACCGGGTCTCTATGGGAGAGAAATGGATTGGGCAGTTCCCTGCCAAAAATAAGATGGGAGAGAAGTTTTTAGCTGTAGCTACTCATACTCCTTTATATGACGATGATGGAAGTTTGATTGGCGTTATTTGTGTCTCAATTGATTCACGACCCGTCCTTGAAGTGAGAGTTCCGTTCTCAGAAGTAAGGCACTTTGAAACAGGTTCAGGCTTCAGCAATCTTAGAACTAGCCTTACAAATAAACTCGGTCTCGATTCTCAACAGCCTCTTCAAGTTGGTATAGCATCAAAAATTACAAATTTGGCATCCAAGGTAAGTAACAAAGTGAAGTTAAGAATCCGAACAGGAGAGAATAATGTGGATCGTGAAGGTGGGAGTGGTGAAAGTTATCATTCTGAGCATGGCCGTTCAGATTTGGTTCTTTCAGACCAGAGAGAAGATGCTAATTCAAGTGGAGCTAGCACACCCAGGGGAGAGGTGCCCCCATCTCCCTTTGGTGTATTTTCTCGCACAGAAGATAAAAGTCAAGGAAAAAATTTAAGAGAGTCTGGTGATGAGGGTGAAGGAAAACCTATTCATAAAGTCTTAACTTCCAAGGCTGAAGCATGGATTCAAAAGAAAACAATGTCATGGCCATGGAAAACAAATGAACGGGATGGGTCAGAGGGAAGGAATGTCCGTGTTGGTTGGCCTTGGTTGCAGAATGATCAAGAAGATGAGCCAGCTCAGAGGAAGCCTCTTTCTTCTTGTGTGAGGCCAGAAAGTCAGACAGGAGAAGGTAATCGACCTGTTAATAATGAAGCATTAGGATCCTGGTCCTCCTTCAATGTTAACAGCACAAGCAGTGCAAGCAGCTGTGGGAGTGGCAGCAGTGCTGTCAATAATAAATTGGACATGGATACTGATTGTTTGGATTATGAAATCTTGTGGGAAGACCTGACAATTGGAGAACAAATTGGGCAAGGATCATGTGGAACTGTGTATCATGCTCTGTGGTATGGATCAGATGTTGCGGTCAAGGTGTTCTCCAGGCAGGAATATTCAGATGATGTGATAATGTCCTTCAGACAAGAGGTATCTGTTATGAAAAGACTTAGACATCCAAATGTCCTTCTGTTCATGGGGGCAGTAACTTCACCTCAACGTCTCTGCATTGTGACAGAGTTCCTCCCACGTGGAAGCTTGTTTCGCTTACTCCAGAGAAACACAGCCAAACTTGACTGGAGACGGCGTGTTCATATGGCTTTAGATATTGCACGGGGCGTAAACTATCTTCACCATTACAGCCCACCTATCATTCATAGAGATTTGAAGTCTTCAAATCTTCTAGTTGACAAGAACTGGACTGTTAAGGTCGGTGATTTTGGCCTTTCACGCCTAAAGCATGAAACATACCTCACAACAAAGACAGGAAAGGGCACACCTCAATGGATGGCACCAGAAGTTCTTCGTAATGAGCCCTCTGATGAGAAGTCTGATGTATACAGCTTTGGAGTGATATTGTGGGAACTTACAACTGAGAAGATCCCTTGGGAGAGTCTTAACTCAATGCAGGTGATTGGAGCTGTTGGGTTCATGAACCAGCGGCTAGAAATTCCAAAGGATGTTGATCCCAAGTGGGCTGCTATAATTGAGAGCTGCTGGCATAGTGATCCAGCCTGCCGGCCAACATTTCAGGAACTGCTGGAAAGGCTTCGAGAGCTGCATAGACGCTATGCCCTTCAATTTCAAGCTTCTCGTACTGCCGGTGCTGAAAACACTCAAAATGAGTCCTAA 2307 0.4582 MGTPPPEELLKKIEDLEVGHAHLKQEMSKLKLSGASDARAEQSHHRQRSHSISPQRSRLNRAGGGGFDGPASWKKGSTSFKHSSPLQRESRSSDPQNDGDGDVGRGPSAVNFTDKQYLNILQSMGHSVHILDLDGRIIYWNRSAEHLYGYPAEEALGKDGIELIVDPRDFALANDIVNRVSMGEKWIGQFPAKNKMGEKFLAVATHTPLYDDDGSLIGVICVSIDSRPVLEVRVPFSEVRHFETGSGFSNLRTSLTNKLGLDSQQPLQVGIASKITNLASKVSNKVKLRIRTGENNVDREGGSGESYHSEHGRSDLVLSDQREDANSSGASTPRGEVPPSPFGVFSRTEDKSQGKNLRESGDEGEGKPIHKVLTSKAEAWIQKKTMSWPWKTNERDGSEGRNVRVGWPWLQNDQEDEPAQRKPLSSCVRPESQTGEGNRPVNNEALGSWSSFNVNSTSSASSCGSGSSAVNNKLDMDTDCLDYEILWEDLTIGEQIGQGSCGTVYHALWYGSDVAVKVFSRQEYSDDVIMSFRQEVSVMKRLRHPNVLLFMGAVTSPQRLCIVTEFLPRGSLFRLLQRNTAKLDWRRRVHMALDIARGVNYLHHYSPPIIHRDLKSSNLLVDKNWTVKVGDFGLSRLKHETYLTTKTGKGTPQWMAPEVLRNEPSDEKSDVYSFGVILWELTTEKIPWESLNSMQVIGAVGFMNQRLEIPKDVDPKWAAIIESCWHSDPACRPTFQELLERLRELHRRYALQFQASRTAGAENTQNES 768
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele23g1412 768 Pfam PAS fold 116 223 IPR013767 GO:0006355
Lele23g1412 768 SUPERFAMILY PYP-like sensor domain (PAS domain) 119 222 IPR035965 -
Lele23g1412 768 CDD PAS 128 225 IPR000014 -
Lele23g1412 768 Gene3D Transferase(Phosphotransferase) domain 1 568 768 - -
Lele23g1412 768 SMART serkin_6 490 749 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele23g1412 768 ProSiteProfiles PAS repeat profile. 113 184 IPR000014 -
Lele23g1412 768 MobiDBLite consensus disorder prediction 76 92 - -
Lele23g1412 768 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 116 748 - -
Lele23g1412 768 MobiDBLite consensus disorder prediction 426 446 - -
Lele23g1412 768 TIGRFAM sensory_box: PAS domain S-box protein 115 225 IPR000014 -
Lele23g1412 768 ProSitePatterns Serine/Threonine protein kinases active-site signature. 609 621 IPR008271 GO:0004672|GO:0006468
Lele23g1412 768 MobiDBLite consensus disorder prediction 410 446 - -
Lele23g1412 768 SUPERFAMILY Protein kinase-like (PK-like) 478 742 IPR011009 -
Lele23g1412 768 MobiDBLite consensus disorder prediction 20 108 - -
Lele23g1412 768 CDD STKc_MAP3K-like 496 742 - -
Lele23g1412 768 MobiDBLite consensus disorder prediction 293 320 - -
Lele23g1412 768 PRINTS Tyrosine kinase catalytic domain signature 603 621 IPR001245 GO:0004672|GO:0006468
Lele23g1412 768 PRINTS Tyrosine kinase catalytic domain signature 564 577 IPR001245 GO:0004672|GO:0006468
Lele23g1412 768 PRINTS Tyrosine kinase catalytic domain signature 713 735 IPR001245 GO:0004672|GO:0006468
Lele23g1412 768 PRINTS Tyrosine kinase catalytic domain signature 650 660 IPR001245 GO:0004672|GO:0006468
Lele23g1412 768 PRINTS Tyrosine kinase catalytic domain signature 669 691 IPR001245 GO:0004672|GO:0006468
Lele23g1412 768 Gene3D PAS domain 126 228 - -
Lele23g1412 768 Pfam Protein tyrosine and serine/threonine kinase 490 742 IPR001245 GO:0004672|GO:0006468
Lele23g1412 768 FunFam PAS domain-containing protein tyrosine kinase family protein 568 759 - -
Lele23g1412 768 FunFam PAS domain-containing protein tyrosine kinase 483 567 - -
Lele23g1412 768 ProSiteProfiles Protein kinase domain profile. 490 749 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele23g1412 768 MobiDBLite consensus disorder prediction 293 371 - -
Lele23g1412 768 SMART pas_2 115 182 IPR000014 -
Lele23g1412 768 Gene3D Phosphorylase Kinase; domain 1 483 567 - -
Lele23g1412 768 MobiDBLite consensus disorder prediction 351 371 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele23g1412 Lele-ChrLele23 18879820 18886680 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele23g1412 1 764 MAP Kinase Kinase Kinase AT3G06620 61.204 0.0 937
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-2 Lele23g1412 PK_Tyr_Ser-Thr 1.1e-67 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele21g0629 21 4189282 4196200 Lele23g1412 23 18879820 18886680 hybridization
Lele22g0623 22 4121640 4128164 Lele23g1412 23 18879820 18886680 hybridization