Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele23g1411 ATGTCTGCGGCGGGCAGAGCGGCAAATTCACTTACCCAAGTTCCCTCTTCGGGCACAAGCTATAAAAGAACGCAGACTACAGAGTCCATCAGCAAAGCAATTGCTCAGTACACTGAGGACGCTCGCCTCCATGCCGTCTTCGAGCAATCTGGCGAGTCAGGTAAGTCTTTTGATTACTCACAGTCCATAAAAACCACCATCCAGTCCGTTCCCGAGCAACAGATTACGGCTTACCTATTGAGAATTCAAAGAGGCGGGTATATTCAGCCATTTGGTTGCATGATTGCCGTGGATGAACCCACTTTTCGGATTATTGGGTACAGTGAAAACGCGCGGGATTTGCTGGGTATAACCCCTCAATCAGTTCCAAACCTTGAAAAATCCGAAACACTGTCGATTGGAGCTGATATTCGTACGCTTTTTACTTCCTCAAGTGCGGTGCTGCTCGAAAAGGCCTTTGGGGCTCGGGAAATCACACTGTTAAACCCCATTTGGATTCATTCTAAGAATTCAGGGAAACCCTTTCATGCAATTTTGCATAGAATTGATGTGGGAATTGTGATTGATTTGGAACCTGCGAGAACAGAGGACCCTGCCCTGTCCATTGCAGGGGCAGTGCAGTCTCAGAAGTTGGCGGTGCGCGCAATCTCGCAGTTGCAGTCGCTTCCTGGGGGAGATATTAAGCTATTGTGTGATACTGTAGTTGAGAGTGTTAGGGAACTGACTGGATATGACCGGGTAATGGTTTATAAATTTCACGAGGATGAACATGGAGAGGTTGTCGCTGAGAGTAAGCGGCCAGACTTGGATCCTTATATGGGTTTGCACTACCCTGCTACTGATATCCCCCAGGCTTCAAGGTTCTTGTTCAAGCAGAATCGTGTTAGGATGATTGGGGATTGCCATGCCACTCCTGTTAAGGTAATTCAGGATGAAGCGCTTATGCAACCACTATGCTTAGTTGGATCAACCCTTCGTGCCCCCCTTGGGTGTCATGCACAGTATATGGCTAATATGGGGTCGATAGCTTCACTGGTAATGGCAGTCATAATCAATGGGAACGATGAGGAAGCTGTTGGTGGTCGTAGCTCAATGAGGCTTTGGGGCCTCGTTGTTTGTCATCATACTTCTGCTAGAAGCATTCCTTTCCCTCTACGCTATGCTTGTGAGTTCCTCATGCAGGCCTTTGGGCTTCAGCTGAATATGGAACTTCAATTGGCGTCGCAGTTATTGGAAAAACGTGTTTTAAGGACGCAGACCCTCTTGTGTGACATGTTGCTTCGGGACTCTCTAACTGGCATTGTTACTCAGAGCCCTAATATTATGGACCTTGTGAAGTGTGATGGAGCAGCTCTCTACTATCAAGGTAACTACTACCCATTAGGTGTCACCCCAACTGAGTCCCAGATAAAGGATATTATGGAGTGGTTGTTGGCCAGCCACGGAGACTCAACAGGCCTAAGCACTGATAGTCTGGCTGATGCTGGGTATCCTGGGGCTGCTTCTCTTGGGGATTCCGTATGTGGGATGGCTGTTGCTTATATTACTGAAAGGGTTTATCTATTCTGGTTCAGATCCAATACAGCGAAAGAGATTAAATGGGGTGGTGCAAAGCATCACCCAGAGGACAAGGATGATGGACAGAGAATGCATCCACGTTCTTCCTTCAAGGCATTTCTAGAAGTGGTAAAAAGCCGTAGTCTACCGTGGGAGAATGCAGAAATGGATGCTATACATTCCTTGCAGCTTATTTTGCGGGACTCATTTAGAGATGCTGAGCAAAACAATTCTAAGGCTGTTGTGCATTCCTCGCTTCATAATCTAGAATTGCAAGGGGTGAATGAACTGAGTTCTGTGGCCAGAGAAATGGTTAGATTGATAGAGACTGCTACTGCTCCCATATTTGCTGTAAATGTTGATGGCTGCATAAATGGCTGGAATACAAAAGCTGCAGAATTGACAGGACTCTCAGTTGAGGAAGCTATGGGGAAGTCTTTGATTCATGATCTTGTGTATAAGGAGTCTGAAGAAACTGTAGACAAGCTTCTTTCTCATGCTTTAAGAGGTGAAGAAGATAAGAATGTTGAAATAAAAATGAGAACATTTGGCCCTGAACATGACAAGAAGGCAGTTTATATTGTGGTGAATGCTTGCTTCAGCAAGGATTATACAAATAATATAGTCGGAGTATGCTTTGTTGGTCAAGATGTTACTGGTCAAAAAGTAGTAATGGACAAATTCATTAACATACAAGGTGACTACAAGGCTATTGTACACAGCCTAAATCCATTGATCCCTCCCATTTTTGCATCGGATGATAACACGTGCTGCTCAGAGTGGAACACTGCAATGGAAAATCTAACAGGATGGAAGCGTGGGGATGTCATTGGGAAAATGCTGGTAGGAGAGGTTTTCGGTAGTTGCTGTCGACTAAAGGGTCCAGATTCTCTAACCAAGTTCATGATTGTGCTGCATAATGCGCTTGGTGGACAGGATACAGATAAATTTTCCTTTTCATTTCTTGATCGGGACGGAAAATATGTGCAGGCACTCCTGACTGCTAATAAGAGAATAAACATGGATGGTCAGATCACTGGGGCTTTCTGCTTCTTGCAAATTGCGAGTCCTGAACTTCAACAGGCTCTGAAAGTCCAGAGACAACAGGAGAAGAAATGCTTTGCTAGGATGAAAGAATTAGCTTACATTTGTCAAGAAATAAAGAATCCTTTGAATGGCATACGCTTTACAAACTCTCTTTTGGAAGCTACAGACTTAACTGATGATCAAAAGCAGTTTCTTGAGACCAGTAATGCTTGTGAGAAGCAGATGTTGAAGATAATACGGGATGTAGATCAGGAGAGCATTGATGATGGGTGGTGTGCTTGCTTGAATGTCCTTGAAACTTCTTGCATCAATTTCAATGAGAGAAGATTCAAGTCTTTGTCTACTTTTGGATTTAGGTCCTTGGAGCTTGAAAAAGGGGAATTTTTACTTGGGAGTGTCATCAATGCAGTCGTTAGCCAAGTGATGCTATTGCTGAGAGAAAGAAATTTACAGTTGATCCGTGATATTCCTGAAGAAATCAAGACCTTAGCTGTATATGGTGATCAATCGAGAATTCAACAGGTCTTGGCTGATTTCTTATTGAATATGGTGCGCTATGCACCATCTCCAGATGGTTGGGTAGAAATTCATGTTTTTCCAAGAATAAAACATATTTCTGACGGACTTACTCTTCTTCATGCTGAATTTAGGATGGTATGTCCTGGTGAAGGTCTTCCTTCTGAATTGATTCAAGACATGTTCAATAGCAGCCGGTGGGTGACTCAAGAAGGCTTGGGGCTGAGCATTTGCAGGAGGATTCTAAAGCTAATGAGTGGTGAAGTCCAATATATCAGGGAGTCGGAACGATGCTACTTCTTAACTTCTCTTGCCATACTCTCAAGAGTATGCAGCTCACCTAACAAAGGTACTTGGGGTCAAGAATTTGAGCAAAAAGCTGATGATTTGGCTTGTTATCCAGCTGATGTGGACTCCATGGTCAGAATTGAACTGCATCCTTCTCCCGCTGTTGTTTAG 3579 0.4412 MSAAGRAANSLTQVPSSGTSYKRTQTTESISKAIAQYTEDARLHAVFEQSGESGKSFDYSQSIKTTIQSVPEQQITAYLLRIQRGGYIQPFGCMIAVDEPTFRIIGYSENARDLLGITPQSVPNLEKSETLSIGADIRTLFTSSSAVLLEKAFGAREITLLNPIWIHSKNSGKPFHAILHRIDVGIVIDLEPARTEDPALSIAGAVQSQKLAVRAISQLQSLPGGDIKLLCDTVVESVRELTGYDRVMVYKFHEDEHGEVVAESKRPDLDPYMGLHYPATDIPQASRFLFKQNRVRMIGDCHATPVKVIQDEALMQPLCLVGSTLRAPLGCHAQYMANMGSIASLVMAVIINGNDEEAVGGRSSMRLWGLVVCHHTSARSIPFPLRYACEFLMQAFGLQLNMELQLASQLLEKRVLRTQTLLCDMLLRDSLTGIVTQSPNIMDLVKCDGAALYYQGNYYPLGVTPTESQIKDIMEWLLASHGDSTGLSTDSLADAGYPGAASLGDSVCGMAVAYITERVYLFWFRSNTAKEIKWGGAKHHPEDKDDGQRMHPRSSFKAFLEVVKSRSLPWENAEMDAIHSLQLILRDSFRDAEQNNSKAVVHSSLHNLELQGVNELSSVAREMVRLIETATAPIFAVNVDGCINGWNTKAAELTGLSVEEAMGKSLIHDLVYKESEETVDKLLSHALRGEEDKNVEIKMRTFGPEHDKKAVYIVVNACFSKDYTNNIVGVCFVGQDVTGQKVVMDKFINIQGDYKAIVHSLNPLIPPIFASDDNTCCSEWNTAMENLTGWKRGDVIGKMLVGEVFGSCCRLKGPDSLTKFMIVLHNALGGQDTDKFSFSFLDRDGKYVQALLTANKRINMDGQITGAFCFLQIASPELQQALKVQRQQEKKCFARMKELAYICQEIKNPLNGIRFTNSLLEATDLTDDQKQFLETSNACEKQMLKIIRDVDQESIDDGWCACLNVLETSCINFNERRFKSLSTFGFRSLELEKGEFLLGSVINAVVSQVMLLLRERNLQLIRDIPEEIKTLAVYGDQSRIQQVLADFLLNMVRYAPSPDGWVEIHVFPRIKHISDGLTLLHAEFRMVCPGEGLPSELIQDMFNSSRWVTQEGLGLSICRRILKLMSGEVQYIRESERCYFLTSLAILSRVCSSPNKGTWGQEFEQKADDLACYPADVDSMVRIELHPSPAVV 1192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele23g1411 1192 ProSiteProfiles Histidine kinase domain profile. 901 1148 IPR005467 -
Lele23g1411 1192 FunFam Phytochrome 987 1150 - -
Lele23g1411 1192 CDD PAS 630 737 IPR000014 -
Lele23g1411 1192 ProSiteProfiles PAS repeat profile. 753 805 IPR000014 -
Lele23g1411 1192 Gene3D PAS domain 82 329 - -
Lele23g1411 1192 Gene3D PAS domain 617 741 - -
Lele23g1411 1192 SMART HisKA_10 894 958 IPR003661 GO:0000155|GO:0007165
Lele23g1411 1192 MobiDBLite consensus disorder prediction 1 25 - -
Lele23g1411 1192 Pfam PAS fold 77 193 IPR013654 GO:0006355
Lele23g1411 1192 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 998 1140 IPR036890 -
Lele23g1411 1192 ProSiteProfiles PAS repeat profile. 619 690 IPR000014 -
Lele23g1411 1192 CDD HATPase_Phy-like 1034 1144 IPR044767 -
Lele23g1411 1192 Gene3D - 976 1139 IPR036890 -
Lele23g1411 1192 PANTHER OS08G0260000 PROTEIN 73 955 - -
Lele23g1411 1192 TIGRFAM sensory_box: PAS domain S-box protein 626 741 IPR000014 -
Lele23g1411 1192 SUPERFAMILY PYP-like sensor domain (PAS domain) 767 870 IPR035965 -
Lele23g1411 1192 Pfam His Kinase A (phospho-acceptor) domain 898 957 IPR003661 GO:0000155|GO:0007165
Lele23g1411 1192 Gene3D - 207 565 IPR029016 -
Lele23g1411 1192 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 226 394 IPR016132 -
Lele23g1411 1192 SMART pas_2 621 688 IPR000014 -
Lele23g1411 1192 SMART pas_2 752 822 IPR000014 -
Lele23g1411 1192 FunFam Phytochrome 766 874 - -
Lele23g1411 1192 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1035 1136 IPR003594 -
Lele23g1411 1192 SMART gaf_1 226 414 IPR003018 GO:0005515
Lele23g1411 1192 FunFam Phytochrome 615 747 - -
Lele23g1411 1192 Gene3D PAS domain 766 874 - -
Lele23g1411 1192 Gene3D - 875 956 - -
Lele23g1411 1192 Pfam Phytochrome region 417 591 IPR013515 GO:0006355|GO:0009584
Lele23g1411 1192 Pfam GAF domain 226 404 IPR003018 GO:0005515
Lele23g1411 1192 SUPERFAMILY PYP-like sensor domain (PAS domain) 82 196 IPR035965 -
Lele23g1411 1192 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 885 950 IPR036097 GO:0000155|GO:0007165
Lele23g1411 1192 CDD PAS 764 872 IPR000014 -
Lele23g1411 1192 FunFam Phytochrome 875 956 - -
Lele23g1411 1192 Pfam PAS fold 753 872 IPR013767 GO:0006355
Lele23g1411 1192 Pfam PAS fold 622 737 IPR013767 GO:0006355
Lele23g1411 1192 SUPERFAMILY PYP-like sensor domain (PAS domain) 626 734 IPR035965 -
Lele23g1411 1192 PRINTS Phytochrome signature 326 347 IPR001294 GO:0006355|GO:0009584
Lele23g1411 1192 PRINTS Phytochrome signature 434 454 IPR001294 GO:0006355|GO:0009584
Lele23g1411 1192 PRINTS Phytochrome signature 141 163 IPR001294 GO:0006355|GO:0009584
Lele23g1411 1192 PRINTS Phytochrome signature 241 260 IPR001294 GO:0006355|GO:0009584
Lele23g1411 1192 PRINTS Phytochrome signature 519 538 IPR001294 GO:0006355|GO:0009584
Lele23g1411 1192 PRINTS Phytochrome signature 622 638 IPR001294 GO:0006355|GO:0009584
Lele23g1411 1192 PRINTS Phytochrome signature 641 656 IPR001294 GO:0006355|GO:0009584
Lele23g1411 1192 PRINTS Phytochrome signature 715 732 IPR001294 GO:0006355|GO:0009584
Lele23g1411 1192 PRINTS Phytochrome signature 735 755 IPR001294 GO:0006355|GO:0009584
Lele23g1411 1192 PRINTS Phytochrome signature 552 570 IPR001294 GO:0006355|GO:0009584
Lele23g1411 1192 SUPERFAMILY GAF domain-like 206 401 - -
Lele23g1411 1192 SUPERFAMILY GAF domain-like 412 589 - -
Lele23g1411 1192 PIRSF Phytochrome_conventional 975 1152 IPR012129 GO:0006355|GO:0009585|GO:0009881|GO:0017006|GO:0042803
Lele23g1411 1192 PIRSF Phytochrome_conventional 10 982 IPR012129 GO:0006355|GO:0009585|GO:0009881|GO:0017006|GO:0042803
Lele23g1411 1192 SMART HKATPase_4 1035 1189 IPR003594 -
Lele23g1411 1192 FunFam Phytochrome 409 539 - -
Lele23g1411 1192 CDD HisKA 894 952 IPR003661 GO:0000155|GO:0007165
Lele23g1411 1192 Gene3D - 409 582 IPR043150 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele23g1411 Lele-ChrLele23 18869262 18874851 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele23g1411 2 1141 Histidine Kinase Gene Family AT4G16250 72.632 0.0 1724