Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele23g1378 ATGGCAAATAACTTAACGGGGCAGCTCGTTAGTGCGGAGATACATGGATTCCATACATTGCAAGAGCTGGATGTTAGGAACACTATGGAGGAAGCAAAATGCAGATGGCTTCGTCCTAATGAGATTCATGCTATACTTAGTAATTACAAGTATTTCACCATCCATGTAAAGCCAGTGCACATGCCTCCAAGTGGTACCTTAGTATTATTTGACCGCAAGATGCTTAGGAACTTTCGAAAAGATGGATACAACTGGAAAAAGAAAAAGGATGGAAAAACTGTGAAGGAAGCTCATGAACACTTAAAAGTTGGTAATGAAGAAAGGATCCATGTATACTATGCACATGGCCAAGATAACCCAAGATTAGTGCGTAGATGTTATTGGCTTCTTGACAAGAGTTTGGAACACATAGTTCTTGTTCACTATCGGGAAACACAAGAGTTGCAGGGCTCTCCGGCTACACCTGTAAATTCATATTCTAGTTTGGGCTCTAATCCAACTGCACCGTTGATTTTATCAGAAGAATTGGATTCTGGGACCAACAATCCATTTGCTGGTGAAGTTAATGACAATTTGAAACTCAAGAGTCATGAACTGAGGCTTCTTGAGCTAAACACACTTGAATGGGATGATCTAGTGGTTACAAATTACCTCAACAATTCTACCACATCTATGGGAGCCAAGGTTCCATATTTTGATCAACAAAATCAGTCTTTGCTGAATGGCAATTTGAGCAATGTAACTAGCAGTCTGTCTGCTGAAATTCCTTCTTTTGATAACATGACACAACCTATTACTGGGAGCAATAATGCACCTTATAGTTTCCCAGAATCTGTAAATTTTCAGACAACAGATAGTCAAGCAAATCCAAATGCAGAAAACGGATATCCCGTCGCTGTGGGTGGTGTTGATTCCTTGGACACTTTGGTCAATGATAGTTTGCAGAGTCAGGACAGCTTTGGAAGGTGGATCAACCACATGATTTCTGATTCACAGTGTTCTGTAGATGAAACAGCTCTTGTATCGCCTGGTATATCTATTCAAGAACCATATTCTTCTCTGGTAGAGAATCATCAGCAACCTTCTCTGCCCGAACAGCTTTTTAATATCACTGATGTCTCTCCTTCATGGGCATCTTCCACTGAGAAGACCAAGATCCTGGTCACTGGAATCTTTCATGATAACTATCTACACCTTGCGAAGTCTAATCTATTTTGTGTCTGCGGTGATGTAAGTGTTCAAGCTGATATTGTTCAAGTTGGGGTCTACCGATGCTGGGTACCATCACATTCCCCAGGATTTGTAAATCTCTATATGAGCCTTGATGGCCATAGACCCATAAGCCAGGTTGTCAATTTTGAGTATCGTACTCCAATTTTGCATGACCCCACAGCCTCTATAGAAGAGAGGTACAACTGGGCCGAATTTCGACTTCAAACGAGGCTTGCTTATTTGCTCTTTGGTACTCATAAGAGTCTTGATATTATCCCTAGTAAAGTATCACCTAGTGCAGTAAGGGAGGCTAAGAACTTTGCTTCAAAGACCTCATTGGTTTCCAGAAGTTGGCAATACTTGGTTAAGTCAACTGAAGACAACAAAACTCCATTTCCTCAAGCAAAAGATGCACTGTTTGAAACATCCTTGAAAAATGGATTAAAGGAATGGCTGTTAGAAAGAATTCTCTTGGGACGTAAGACTACTGAATATGATTCCCAAGGTCAAGGTGTAATACATTTGTGCGCAATTCTGGGATATACTTGGGCTGTTTCATTATTTTCAGGATCGGGCTTGTCACTAGATTTTCGTGATAAATTTGGATGGACAGCTCTTCATTGGGCAGCATATTGTGGAAGGGAGAAAATGGTTGCAGTGCTGTTGTCTGCTGGGGCAAAGCCTAACTTAGTCACAGATCCTACTCCACAAAATCCTGGTGGATGCACTGCTGCTGATCTTGCTTTTATGCAGGGTTATGAAGGCTTAGCAGCTTATCTTTCAGAAAAATCTCTGGTTGAGCAGTTCAATGACATGAGCTTAGCTGGAAATATTAGTGGCAAACTGGAAACAAGCACAAATGATCCTGTAGATTATGACAATCTCACTGAGGATCAACTATATCTAAAGGATACATTGGCAGCTTACCGAACAACTGCTGAGGCGGCAGCACAAATACATGCTGCATTTAGGGAGCACTCACTAAAAGTACGAGCAAAGGCGGTTCAGATTATAAATCCAGAGGATGAGGCCCGTATGATTGTTGCTGCAATGAAGATTCAACATGCCTATCGCAACTACAACACAAGGAGGATGATGGCTGCTGCAGCTCGCATCCAGCATAGGTTCCGTACATGGAAATTGCGTAAAGAATTTCTCAACATGCGACGTCAGGCTATCAAAATCCAAGCTGCTTTCCGGGGCTACCAAGTGAGGAAGCAATATCGTAAAATTCTCTGGTCTGTTGGAGTACTTGAAAAAGTAATCCTGCGATGGAGATTGAAGAGAAAAGGTTTCCGTGGACTTCAGGTTAATCCCGTCCAACAAGAGCAAGAACCAAAGCAGGAAAGCGACGCAGAGGAGGACTTCTTCCGGACTGGTCGAAAACAAGCCGAAGAACGCGTGGAGAGATCTGTAGTACGTGTTCAGGCCATGTTCCGTTCAAAGAAAGCACAAGAAGAGTATAGGAGGATGAAGCTGGCTCACAATCAGGCAAAGCTGGAACTTGAATATGAAGATCTGCTCAATTCAGAGGTTGATATTCTATAG 2760 0.4214 MANNLTGQLVSAEIHGFHTLQELDVRNTMEEAKCRWLRPNEIHAILSNYKYFTIHVKPVHMPPSGTLVLFDRKMLRNFRKDGYNWKKKKDGKTVKEAHEHLKVGNEERIHVYYAHGQDNPRLVRRCYWLLDKSLEHIVLVHYRETQELQGSPATPVNSYSSLGSNPTAPLILSEELDSGTNNPFAGEVNDNLKLKSHELRLLELNTLEWDDLVVTNYLNNSTTSMGAKVPYFDQQNQSLLNGNLSNVTSSLSAEIPSFDNMTQPITGSNNAPYSFPESVNFQTTDSQANPNAENGYPVAVGGVDSLDTLVNDSLQSQDSFGRWINHMISDSQCSVDETALVSPGISIQEPYSSLVENHQQPSLPEQLFNITDVSPSWASSTEKTKILVTGIFHDNYLHLAKSNLFCVCGDVSVQADIVQVGVYRCWVPSHSPGFVNLYMSLDGHRPISQVVNFEYRTPILHDPTASIEERYNWAEFRLQTRLAYLLFGTHKSLDIIPSKVSPSAVREAKNFASKTSLVSRSWQYLVKSTEDNKTPFPQAKDALFETSLKNGLKEWLLERILLGRKTTEYDSQGQGVIHLCAILGYTWAVSLFSGSGLSLDFRDKFGWTALHWAAYCGREKMVAVLLSAGAKPNLVTDPTPQNPGGCTAADLAFMQGYEGLAAYLSEKSLVEQFNDMSLAGNISGKLETSTNDPVDYDNLTEDQLYLKDTLAAYRTTAEAAAQIHAAFREHSLKVRAKAVQIINPEDEARMIVAAMKIQHAYRNYNTRRMMAAAARIQHRFRTWKLRKEFLNMRRQAIKIQAAFRGYQVRKQYRKILWSVGVLEKVILRWRLKRKGFRGLQVNPVQQEQEPKQESDAEEDFFRTGRKQAEERVERSVVRVQAMFRSKKAQEEYRRMKLAHNQAKLELEYEDLLNSEVDIL 919
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele23g1378 919 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 737 819 IPR027417 -
Lele23g1378 919 Gene3D - 768 816 - -
Lele23g1378 919 Gene3D Immunoglobulins 364 459 IPR013783 -
Lele23g1378 919 ProSiteProfiles IQ motif profile. 753 779 IPR000048 GO:0005515
Lele23g1378 919 SMART CG_1_2 29 146 IPR005559 GO:0003677
Lele23g1378 919 ProSiteProfiles IQ motif profile. 792 816 IPR000048 GO:0005515
Lele23g1378 919 SMART ANK_2a 644 675 IPR002110 GO:0005515
Lele23g1378 919 SMART ANK_2a 605 634 IPR002110 GO:0005515
Lele23g1378 919 Pfam CG-1 domain 31 144 IPR005559 GO:0003677
Lele23g1378 919 ProSiteProfiles IQ motif profile. 769 798 IPR000048 GO:0005515
Lele23g1378 919 SUPERFAMILY E set domains 369 456 IPR014756 -
Lele23g1378 919 Coils Coil 885 905 - -
Lele23g1378 919 FunFam Calmodulin-binding transcription activator 2 768 816 - -
Lele23g1378 919 Pfam IQ calmodulin-binding motif 794 813 IPR000048 GO:0005515
Lele23g1378 919 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 24 901 - -
Lele23g1378 919 SUPERFAMILY Ankyrin repeat 549 667 IPR036770 -
Lele23g1378 919 Pfam Ankyrin repeats (3 copies) 557 634 IPR002110 GO:0005515
Lele23g1378 919 ProSiteProfiles Ankyrin repeat profile. 605 637 IPR002110 GO:0005515
Lele23g1378 919 SMART iq_5 871 893 IPR000048 GO:0005515
Lele23g1378 919 SMART iq_5 768 790 IPR000048 GO:0005515
Lele23g1378 919 SMART iq_5 791 813 IPR000048 GO:0005515
Lele23g1378 919 FunFam Calmodulin-binding transcription activator 5 364 460 - -
Lele23g1378 919 FunFam calmodulin-binding transcription activator 5 535 675 - -
Lele23g1378 919 ProSiteProfiles Ankyrin repeat region circular profile. 605 633 - -
Lele23g1378 919 ProSiteProfiles CG-1 DNA-binding domain profile. 25 151 IPR005559 GO:0003677
Lele23g1378 919 ProSiteProfiles IQ motif profile. 873 901 IPR000048 GO:0005515
Lele23g1378 919 Gene3D - 537 674 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele23g1378 Lele-ChrLele23 18707707 18715424 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele23g1378 29 905 CAMTA Transcription Factor Family AT3G16940 56.428 0.0 961
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Lele23g1378 CG-1 4.1e-46 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele23g1378 23 18707707 18715424 Lele23g1378 23 18707707 18715424 ECH
Lele21g0660 21 4371608 4378669 Lele23g1378 23 18707707 18715424 hybridization
Lele22g0651 22 4287178 4294528 Lele23g1378 23 18707707 18715424 hybridization