Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele23g1361 ATGTCTCTCCGGCCGAATGCTAGAACCGAGGTCCGCCGCAACCGCTACAAGGTGGCGGTGGACGCCGATGAGGGCCGCCGAAGAAGAGAAGATAACATGGTCGAGATCCGTAAGAGCAAGCGCGAAGAGAGTCTGCAGAAGAAGCGTCGCGAAGGCCTGCAAGCTCAGCAGCAATTCGCCACTCCTATTCAAACTTCAACTGTTGAGAAAAAGTTGGAGAGTCTTCCTTCCATGGTTGCTGGTGTTTGGTCGGATGACAGCAGTCTCCAGCTGGAAGCGACTACACAATTTCGGAAGCTGCTTTCTATTGAGCGGAGCCCTCCAATTGAGGAAGTTATCCAATCCGGTGTTGTGCCGCGTTTTGTTGAGTTTCTAGTTAGGGAAGATTTCCCCCAACTTCAGTTTGAGGCCGCATGGGCTCTTACTAATATAGCATCTGGAACATCTGAGAACACCAAGGTGGTAATTGATCACGGGGCTGTCCCAATATTTGTTAAGCTACTCAGTTCTCCAAGTGATGATGTTCGGGAGCAGGCAGTGTGGGCACTTGGAAATGTTGCCGGTGACTCCCCTAGGTGCCGTGATCTTGTTCTCAGTCATGGTGCTCTACTCCCCTTATTGAACCAGTTGAATGAGCATGCAAAGCTTTCAATGTTGAGAAATGCCACGTGGACACTATCCAATTTTTGCAGGGGCAAGCCACAACCCCCATTCGAGCAGGTGAGGCCAGCACTTCCGGCTTTAGAGCGTTTGGTTTTTTCCAATGATGAAGAAGTCCTGACAGATGCGTGCTGGGCACTTTCATATTTATCTGATGGAACAAACGATAAAATTCAAGCGGTTATTGAGGCAGGTGTTTGTGGCCGATTAGTCCAGCTCCTTCTGCATCCAGCTCCTTCGGTTCTTATTCCTGCTCTTCGCACAGTGGGAAATATTGTGACTGGAGATGATATTCAGACTCAGAGTATTATCAATCATGGTGCACTGCCATGCCTTTTGAGCCTGTTGACACATAATCATAAGAAAAGCATTAAGAAAGAAGCCTGCTGGACCATATCAAATATTACTGCTGGAAACAGAGAACAGATACAGGCTGTTATTGAAGCTGGTCTGATTGCTCCACTTGTCAATCTCCTTCAAAATGCTGAGTTTGATATCAAGAAGGAAGCTGCGTGGGCAATCTCAAATGCTACATCTGGTGGTACTCATGAGCAGATTAAGTACTTGGTGAGTCAAGGTTGCATAAAGCCGCTCTGTGATCTGCTTGTTTGCCCGGACCCAAGGATTGTCACTGTCTGTTTAGAAGGCCTAGAGAATATTCTGAAGGTTGGGGAAGCTGAGAAGAGCCTAGGTAATACTGGGGAAGTCAACTTGTATGCGCAGATGATAGATGATGCTGAGGGATTGGAAAAGATCGAAAACCTGCAGAGTCATGACAACAATGAAATATACGAGAAAGCCGTAAAGATTCTTGAGACGTACTGGTTGGAAGAAGAGGATGAGACCCTGCCTTCTGGTGATGGTGCGCAACCTACTTTCAATTTTGGGGGTAGTGAGAATCCAGTCCCATCTGGTGGATTCAACTTCAGTTGA 1593 0.4739 MSLRPNARTEVRRNRYKVAVDADEGRRRREDNMVEIRKSKREESLQKKRREGLQAQQQFATPIQTSTVEKKLESLPSMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLVREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSHGALLPLLNQLNEHAKLSMLRNATWTLSNFCRGKPQPPFEQVRPALPALERLVFSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCGRLVQLLLHPAPSVLIPALRTVGNIVTGDDIQTQSIINHGALPCLLSLLTHNHKKSIKKEACWTISNITAGNREQIQAVIEAGLIAPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKSLGNTGEVNLYAQMIDDAEGLEKIENLQSHDNNEIYEKAVKILETYWLEEEDETLPSGDGAQPTFNFGGSENPVPSGGFNFS 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele23g1361 530 Gene3D - 73 496 IPR011989 -
Lele23g1361 530 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 116 159 IPR000225 GO:0005515
Lele23g1361 530 Pfam Armadillo/beta-catenin-like repeat 190 231 IPR000225 GO:0005515
Lele23g1361 530 Pfam Armadillo/beta-catenin-like repeat 359 398 IPR000225 GO:0005515
Lele23g1361 530 Pfam Armadillo/beta-catenin-like repeat 403 440 IPR000225 GO:0005515
Lele23g1361 530 Pfam Armadillo/beta-catenin-like repeat 319 357 IPR000225 GO:0005515
Lele23g1361 530 Pfam Armadillo/beta-catenin-like repeat 148 187 IPR000225 GO:0005515
Lele23g1361 530 Pfam Armadillo/beta-catenin-like repeat 106 146 IPR000225 GO:0005515
Lele23g1361 530 Pfam Armadillo/beta-catenin-like repeat 244 271 IPR000225 GO:0005515
Lele23g1361 530 Pfam Armadillo/beta-catenin-like repeat 275 313 IPR000225 GO:0005515
Lele23g1361 530 MobiDBLite consensus disorder prediction 502 530 - -
Lele23g1361 530 Gene3D - 11 50 IPR036975 GO:0006606
Lele23g1361 530 FunFam Importin subunit alpha 73 496 - -
Lele23g1361 530 SMART arm_5 148 188 IPR000225 GO:0005515
Lele23g1361 530 SMART arm_5 233 272 IPR000225 GO:0005515
Lele23g1361 530 SMART arm_5 359 399 IPR000225 GO:0005515
Lele23g1361 530 SMART arm_5 316 357 IPR000225 GO:0005515
Lele23g1361 530 SMART arm_5 402 442 IPR000225 GO:0005515
Lele23g1361 530 SMART arm_5 274 314 IPR000225 GO:0005515
Lele23g1361 530 SMART arm_5 105 146 IPR000225 GO:0005515
Lele23g1361 530 SMART arm_5 189 231 IPR000225 GO:0005515
Lele23g1361 530 PANTHER IMPORTIN ALPHA 12 501 - -
Lele23g1361 530 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 243 285 IPR000225 GO:0005515
Lele23g1361 530 SUPERFAMILY ARM repeat 6 500 IPR016024 -
Lele23g1361 530 Pfam Importin beta binding domain 12 95 IPR002652 GO:0006606|GO:0061608
Lele23g1361 530 Pfam Atypical Arm repeat 457 501 IPR032413 -
Lele23g1361 530 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 370 398 IPR000225 GO:0005515
Lele23g1361 530 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 159 201 IPR000225 GO:0005515
Lele23g1361 530 MobiDBLite consensus disorder prediction 38 57 - -
Lele23g1361 530 FunFam Importin subunit alpha 11 50 - -
Lele23g1361 530 ProSiteProfiles IBB domain profile. 1 58 IPR002652 GO:0006606|GO:0061608
Lele23g1361 530 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 327 370 IPR000225 GO:0005515
Lele23g1361 530 PIRSF Importin_alpha 2 529 IPR024931 GO:0005737|GO:0006606|GO:0061608
Lele23g1361 530 MobiDBLite consensus disorder prediction 507 530 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele23g1361 Lele-ChrLele23 18609932 18613951 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele23g1361 131 391 U-box Gene Family AT3G46510 24.809 6.57e-10 59.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele21g0677 21 4467294 4471275 Lele23g1361 23 18609932 18613951 hybridization
Lele22g0664 22 4381209 4384972 Lele23g1361 23 18609932 18613951 hybridization