Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele23g1359 ATGGTGGATCCGAGCGGGAAAGGATCGGAAGCCGAGGAGGCTAATGCGAGGAACCCAAATGGGGGTTCGTCGGAAGAGAGCCCAACAATGAACGAGCAGAAGAAGACGTGCGCCGATTGCGGCACCAGCAAGACCCCTCTCTGGCGAGGTGGTCCAGCTGGGCCAAAGTCACTGTGCAACGCTTGTGGTATCAAAAGCAGGAAGAAGAAGAGAGCGATTCTGGGTTTGAACAAGGGAAGCATGGAAGAGAAGAAAGGGAAAAGAAACAGCAGTAAAAACAATGGAAGCAGCAATATTGGGGACAGTTTGAAGCAGAGGTTAATGGCATTGGGAAGCGAGGTTTTGATGCAGAGGAACAAGTTGGGAGAGGAAGAACAAGCAGCAGTGCTATTGATGGCTCTCTCATATGGATCCGTTTATGCTTAG 426 0.507 MVDPSGKGSEAEEANARNPNGGSSEESPTMNEQKKTCADCGTSKTPLWRGGPAGPKSLCNACGIKSRKKKRAILGLNKGSMEEKKGKRNSSKNNGSSNIGDSLKQRLMALGSEVLMQRNKLGEEEQAAVLLMALSYGSVYA 141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele23g1359 141 MobiDBLite consensus disorder prediction 16 40 - -
Lele23g1359 141 Pfam GATA zinc finger 37 71 IPR000679 GO:0006355|GO:0043565
Lele23g1359 141 MobiDBLite consensus disorder prediction 1 55 - -
Lele23g1359 141 MobiDBLite consensus disorder prediction 72 101 - -
Lele23g1359 141 Gene3D - 31 98 IPR013088 GO:0006355|GO:0008270
Lele23g1359 141 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 32 71 - -
Lele23g1359 141 MobiDBLite consensus disorder prediction 75 90 - -
Lele23g1359 141 CDD ZnF_GATA 36 88 IPR000679 GO:0006355|GO:0043565
Lele23g1359 141 ProSitePatterns GATA-type zinc finger domain. 37 62 IPR000679 GO:0006355|GO:0043565
Lele23g1359 141 PANTHER OS01G0976800 PROTEIN 9 141 - -
Lele23g1359 141 ProSiteProfiles GATA-type zinc finger domain profile. 31 67 IPR000679 GO:0006355|GO:0043565
Lele23g1359 141 SMART GATA_3 31 86 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele23g1359 Lele-ChrLele23 18603752 18604365 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele23g1359 1 141 C2C2-Gata Transcription Factor Family AT3G06740 53.846 1.04e-45 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Lele23g1359 GATA 2e-16 CL0167
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele23g1359 23 18603752 18604365 Lele23g1359 23 18603752 18604365 ECH
Lele21g0680 21 4476709 4477324 Lele23g1359 23 18603752 18604365 hybridization