Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele23g1357 ATGAATCTGAGCAACGCCAAGGCATCCATGTCAACGGCCAGTTCTAGTACCGTTCGGAAATCCGGTGACGGCGCCGGTGCCGTCGACCAGTTCCCGGCGGGCTTGCGGGTACTGGTGGTCGACGATGATCCCACTTGCCTTATGATCCTTGAGAAGATGCTTCGTACTTGCCTCTACGAAGTAACAAAATGCAATCGAGCTGAAGTTGCATTGTCTCTTCTGAGAGAGACCAAAAACGGGTTCGACATAGTTATAAGCGATGTGCATATGCCAGACATGGATGGCTTCAAGCTTTTAGAACACATAGGGTTGGAGATGGACCTTCCAGTTATTATGATGTCAGCAGATGATGGGAAAAATGTTGTTATGAAAGGTGTAACACATGGTGCTTGCGATTACCTAATAAAACCTGTGCGTATCGAGGCCTTGAAGAACATATGGCAGCATGTGGTTCGGAAAAGAAAGAACGAGTGGAAGGATTTGGAGCAATCATATAGCACAGAAGAAGGAGATCGGCAGCAAAAGGCATCGGATGAAGCAGATTACTCGTCGTCAGCTAATGAAGGAAATTGGAGAAATGCTAAGAAGAAGAGAGATGAGGAGGAAGAAGCAGAGGAGAAGGATGATACTTCTACATTAAAGAAGCCACGCGTCGTTTGGTCCGTCGAGCTCCACCAACAGTTTGTGGCTGCTGTGAATCAACTGGGAATTGACAAGGCTGTTCCCAAGAAAATTCTGGAATTGATGAATGTTCCTGGGCTCACCAGAGAAAATGTTGCTAGCCATCTTCAGAAATACCGTTTGTATCTAAGAAGACTCAGTGGCGTTTCTCAGCATCAGAGTAACATGAACAACTCTTTCATCAGTCAACAAGAAGCAACCTTTGGAACAATGTCAGCATTTAATGGAATCGATCTTCAAGCTCTTGCAGCAGCCGGCCAGCTTCCGGCACAAAGTCTGGCAGCACTTCAAGCAGCAGGACTCGGTGGATCAGCTGCTAAAGTTGGAGTATCTGTGCCCCTTGTCGATGAAAGGAACCTTTTCAGTTTTGAAAACCCTAGATTAAGATTTGGAGATGGGCAACAGCAGCACTTGAGCAGTACTAAATCAACAAACTTGCTTCATGGAATCCCTACCAACATGGAGCCAAGGCAGCTTGCCAATTTGCATCAATCAACACAATCCCCCGGTGGCATGAACGTGCGAGTCAACGCATCCGCGGCACAGAGCAACTCCTTATTGATGCCAATGACTCAATCTCAACCGAGAGGTCAGATGCTCAACGAAAACACTGCTTCGCATGTTCCGAGACTTCCATTATCCATTGGGCAGCCTACTGCACCAACTGGAATTTCTAACGCTGCTTCTCTGGGAAGAAATGGGATTGCTGGTAATCACAGAGGAGCTTCTTATAATCCAATTCCACAAACTTCTTCAATGCCAAGTTTTCCCGCGAACCAAACTACTGAAATGTCTGTCAGTAGTTTCCCACTTGGAAGCACACCAGGCATATCTAGTATCCTGCCGAAAGGCGCATTTCAAGAGGAAGATACTTCAGGAATTAAAGGATCTGGGGGATTTGTGCCAAGTTATGATATTTTTGACGAACTGAACCAGCATAAGTCCCATGATTGGGGACAAAACGTGGGCCTCACATACGATACCTCTCAGCGTGCAAATCCTTTACACGGTAAAATCGATGTATTGCCATCAGTTATAGTACATCAGAGCTTTTCTTCCTCCACCCAACAACAACAAACTGGTCAGAATAGAGATTCTACTCTGATCCGAAAATCCATGTACTCCCAAGGAAAAGGTTTGGAACAAGGCAACCTCCAAAATATTGATCAAAACCTCCATACTCTTGTTGAAAATCCTGCAAGGGTCAAGACTGAAATAATTTCTGATGCATACTCTCAGTCGAACTTCTTCCCCGAGCATTATGAGCAGGATGATCTCATGAGTGCGCTTCTGAAACAGCAAGCGGGCATTGGAGCAGCAGAGAATGAATTTGACTTTGATGGATATTCCTTGGACAACATTCCTGTCTAG 2052 0.4561 MNLSNAKASMSTASSSTVRKSGDGAGAVDQFPAGLRVLVVDDDPTCLMILEKMLRTCLYEVTKCNRAEVALSLLRETKNGFDIVISDVHMPDMDGFKLLEHIGLEMDLPVIMMSADDGKNVVMKGVTHGACDYLIKPVRIEALKNIWQHVVRKRKNEWKDLEQSYSTEEGDRQQKASDEADYSSSANEGNWRNAKKKRDEEEEAEEKDDTSTLKKPRVVWSVELHQQFVAAVNQLGIDKAVPKKILELMNVPGLTRENVASHLQKYRLYLRRLSGVSQHQSNMNNSFISQQEATFGTMSAFNGIDLQALAAAGQLPAQSLAALQAAGLGGSAAKVGVSVPLVDERNLFSFENPRLRFGDGQQQHLSSTKSTNLLHGIPTNMEPRQLANLHQSTQSPGGMNVRVNASAAQSNSLLMPMTQSQPRGQMLNENTASHVPRLPLSIGQPTAPTGISNAASLGRNGIAGNHRGASYNPIPQTSSMPSFPANQTTEMSVSSFPLGSTPGISSILPKGAFQEEDTSGIKGSGGFVPSYDIFDELNQHKSHDWGQNVGLTYDTSQRANPLHGKIDVLPSVIVHQSFSSSTQQQQTGQNRDSTLIRKSMYSQGKGLEQGNLQNIDQNLHTLVENPARVKTEIISDAYSQSNFFPEHYEQDDLMSALLKQQAGIGAAENEFDFDGYSLDNIPV 683
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele23g1357 683 ProSiteProfiles Response regulatory domain profile. 36 151 IPR001789 GO:0000160
Lele23g1357 683 MobiDBLite consensus disorder prediction 1 23 - -
Lele23g1357 683 MobiDBLite consensus disorder prediction 163 178 - -
Lele23g1357 683 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 214 271 IPR017930 -
Lele23g1357 683 FunFam Two-component response regulator 35 172 - -
Lele23g1357 683 Pfam Myb-like DNA-binding domain 217 267 IPR001005 -
Lele23g1357 683 Gene3D - 212 274 - -
Lele23g1357 683 PIRSF RR_ARR_type-B 9 673 IPR017053 GO:0003677|GO:0003700|GO:0009736
Lele23g1357 683 PANTHER TWO-COMPONENT RESPONSE REGULATOR 35 361 IPR045279 GO:0009736
Lele23g1357 683 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 215 268 IPR006447 GO:0003677
Lele23g1357 683 MobiDBLite consensus disorder prediction 191 212 - -
Lele23g1357 683 SUPERFAMILY CheY-like 34 159 IPR011006 -
Lele23g1357 683 SUPERFAMILY Homeodomain-like 212 272 IPR009057 -
Lele23g1357 683 MobiDBLite consensus disorder prediction 1 21 - -
Lele23g1357 683 MobiDBLite consensus disorder prediction 163 212 - -
Lele23g1357 683 Gene3D - 35 173 - -
Lele23g1357 683 CDD REC_typeB_ARR-like 37 151 - -
Lele23g1357 683 Pfam Response regulator receiver domain 37 145 IPR001789 GO:0000160
Lele23g1357 683 FunFam Two-component response regulator 211 274 - -
Lele23g1357 683 SMART REC_2 35 147 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele23g1357 Lele-ChrLele23 18588683 18591643 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele23g1357 69 683 Response Regulator Gene Family AT3G16857 49.848 2.19e-180 525
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Lele23g1357 Response_reg 1.7e-22 CL0304
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele23g1357 23 18588683 18591643 Lele23g1357 23 18588683 18591643 ECH
Lele21g0682 21 4491033 4494005 Lele23g1357 23 18588683 18591643 hybridization
Lele22g0670 22 4404944 4407942 Lele23g1357 23 18588683 18591643 hybridization