Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele23g1340 ATGTCACCCGTTGCATCGCAACGGCAAGGCGGCCCTGAGCCCGCTCGAATTTTCGATGAGTTGCCCAAAGCTACCATCGACTCCGTCTCTCGTCCCGACGCTGGCGACATCAGTCCTATGCTTCTTTCTCACACCATCGAATTTCAATACCAACAATTCAAGTGGCAGTTGGTGAAGAAAGCTTCTCAAGTGATTTGTTTACATTTTGCATTGAAGAAACGTGCATTTATTGAGGAAATTAATGAAAAGCAAGAGCAGGTTAAAGAATGGGTTCAAAATCTAGGAATAGGAGAAAACACTACTGTGGTGCAAGATGACGAAGAAGTAGATGATGCAACTATCTTGCATCATGATGAAAGTGCTAAAGACAGGGACGTTCCATCTATTGCTGCCTTACCAATTATACGGCCAGCCTTAGTCGGGCAGCAGTCTGTCTCAGAGAGCGCGATGGTTGCTATGCAAGGATATCTCAATCACTTTTTTGGAAATATTAGTATTGTTCATTCTCCAGAGGTTTGCTTCATGCATGTGCTTATTGATGATAATACTCGTTTGCAAGTTTTTGGAGGCCTCAACGTTGAATATGGCTCCAAGTTGAAAGAAGAATATGTGATGGTGAAGCATCTGCCAAACATTTCAAAGGATGATGATTCTAGACAATGTTTTATTGTTCAATGTTTCAGTTGTTGCAATGACAACTGGCAAAAGGTTTGGGCTGTACTAAAACCTGGATTCTTGGCATTTCTGGCAGATCCTTTTGATACCCAACCTTTGGACATTATTGTTTTTGATGTACTTCGTGCCTCAGATGGGAATAGAGAAGGTTGTCCATCACTAGCAACACAAATGGTTGAACCAAACCCTTTACGCCATTCATTCAAGGTGACTTCTGGAAATCGAAGCATTAGGGTAAGAGTAAAGAGTAGTGAGAAAGTTAAAGATTGGGTCGCTGCTATTAATGATGCTGGAGTAAAACCCTCTGAAGGCTGGTGCCATCCTCACCGCTATGGTTCTTTTGCTCCTCCAAGAGGCTTGATTGAAGATGATAACCAGGCTCAATGGTTCGTAGATGGTCAGGCAGCATTTGAAGCCATTTCTGCTTCAATTGAGGAAGCAAAATCGGAGATATTTATCTGTGGGTGGTGGCTGTGCCCAGAACTGTATATGCGGCGTCCTTTTCACTCTCATGCTTCATCAAGGCTTGATAATTTGCTGGAAGCAAAGGCTAAGCAAGGGGTTAAGATTTTTATTCTTCTCTACAAAGAAGTGGCTCTTGCTTTGAAAATCAACAGCATTCATGAGAATGTGAGGGTGTTACGCTGTCCTGATCACTTTTCTAGTGGCGTTTACCTGTGGGAATCTGAACCTAACTCATGGGAAGATACAATGAAAGATGAATTAGATCGTGGAAAATATCCTCGTATGCCATGGCATGATGTCCACTGTGCCCTTTGGGGACCACCTTGTCGTGACATTGCTAGGCACTTTGTTCAACGATGGAATTATGCAAAGGGAGGCCTTGATGATAATGGTGCAGCATCTGTAAGAGCCATAATGCATTGGCAATATCGAACCATATGTAGGGGACAAAAATCTATATTGCATAATCTCTGTGATCTCCTGGGTGCAAAAGCCCATGACTACATATCTTTCTTTGGCCTCAGGGCTTATGGAAGACTCTTTGATGGTGGTCCGGTGGCAACCAGCCAGGTGTACGTTCACAGTAAAATCATGATAGTAGATGACTGTACAACTTTGATAGGATCTGCTAATATTAACGATAGAAGTTTACTTGGCTCCAGAGACTCTGAGATTGATCAAATAGCGGACCCAATTGTTGATTCTACTTATAAGGACATTTGGATGGCAAGAGCCAAGAAATACTGCAATTTTCCAAGACGTCTTTCTTGTGTGCCGAATGATTTGATGCACGCCAGAGTTGCTTTCAGACAAAGCACAGCTCGCTGGAAAGAAAAAATTGGTCACACAACTATTGATATAGGAATTGCCCCGAAAGTGTTAGAATCTTTTCATAATGGAGCTATAAAGAATACGGATGCCTTGGAGGGATTAGCTTCAGTGAAGGGTCATCTTGTACATATCAATGCCCCCCTGGAAGCGCTCATTCCCCTTAATGATTTGGACAGAAGTGTGATTCATTCACTGTGTGATTGGAATGTAGTGGTGGCCGCCATGGTTCTCTTTCCATCTCTTGTTAATGGATTGGCGAGAACTGTGTCATTCAGAAGAGAAAAGAATAGTCCAAAGGATGAAGAAGATGGAAGGAAAGTTGTGGAAGCATTGGCCAAAGAAGCAAAGAAGAATGAACTGTTATTGAGTTCATCTGGAACTGTAAAATCTCATAACGCTAACACTTTTGCATCTGTCTTCTCCAAGAGAGGCACAAAAGGGACCAATCAGGATCGTCTTGCTGTTTGGGAGGGATTTGGTTGCCAAGATGACATGATCTTCTGTGGGATATTTGATGGACATGGGCCTTGGGGACACTTTGTAGCCAAGAGGGTGAGAAAATTAATACCTGTTTCTTTACTCTGCAACTGGCAAGAAGCTTTGGCTGCAACATCACTTGATCTGGATTTTAAACTTGAAGAAGACAGAAACCTTCATTGGTTTGACCTATGGAAGAAATCCTACTTAAAGACTTGTGCTGCTGTGGATCAGGATCTGAAGAACCATGCCCGGTTTGATTCTTTTCAAAGTGGTGCTACTGCTTTGACAATTATTAAACAGGGTAAACTTCTCACCATAGCAAATTTAGGTGATTCTAGGGCTGTCTTGGCAACTGCTTCAGAAGATGATGATGGAACATTAATTCCTCTTCAACTTACCAATGATTTAAAGCCAAACTTACCAGAGGAAGCAGAGCGCATAAAGCAGTGTAGAGGGAAGGTGTTTTGTATGGAAGATGAACCAGGAGTGTACAGAGTTTGGTTGCCAAATGGTAAAACTCCAGGGCTTGCCATTTCAAGAGCCTTTGGTGATTACTGTGTCAAGGACTTTGGACTCATCTCTGTGCCTCAAGTCACTCAAAGAATGCTCACCACCAGGGATCAGTTCATAATCTTGGCATCAGATGGGGTATGGGATGTTATTTCCAACGATGAAGCAGTGAAGATTGTAGCCTCAGTGCCTCAGAAGGAAATAGCAGCTCAGAGACTGGTTCAATGTGCTGCATACGAATGGAAACGAAAGAGAAGAAACATAGCCATGGATGACATGTCCGCTATTTGTCTCTTCTTTCACTCTTCTTCTTCATCTTACTCACTTAAAACTCATGAACTTGTCAAATAA 3312 0.4251 MSPVASQRQGGPEPARIFDELPKATIDSVSRPDAGDISPMLLSHTIEFQYQQFKWQLVKKASQVICLHFALKKRAFIEEINEKQEQVKEWVQNLGIGENTTVVQDDEEVDDATILHHDESAKDRDVPSIAALPIIRPALVGQQSVSESAMVAMQGYLNHFFGNISIVHSPEVCFMHVLIDDNTRLQVFGGLNVEYGSKLKEEYVMVKHLPNISKDDDSRQCFIVQCFSCCNDNWQKVWAVLKPGFLAFLADPFDTQPLDIIVFDVLRASDGNREGCPSLATQMVEPNPLRHSFKVTSGNRSIRVRVKSSEKVKDWVAAINDAGVKPSEGWCHPHRYGSFAPPRGLIEDDNQAQWFVDGQAAFEAISASIEEAKSEIFICGWWLCPELYMRRPFHSHASSRLDNLLEAKAKQGVKIFILLYKEVALALKINSIHENVRVLRCPDHFSSGVYLWESEPNSWEDTMKDELDRGKYPRMPWHDVHCALWGPPCRDIARHFVQRWNYAKGGLDDNGAASVRAIMHWQYRTICRGQKSILHNLCDLLGAKAHDYISFFGLRAYGRLFDGGPVATSQVYVHSKIMIVDDCTTLIGSANINDRSLLGSRDSEIDQIADPIVDSTYKDIWMARAKKYCNFPRRLSCVPNDLMHARVAFRQSTARWKEKIGHTTIDIGIAPKVLESFHNGAIKNTDALEGLASVKGHLVHINAPLEALIPLNDLDRSVIHSLCDWNVVVAAMVLFPSLVNGLARTVSFRREKNSPKDEEDGRKVVEALAKEAKKNELLLSSSGTVKSHNANTFASVFSKRGTKGTNQDRLAVWEGFGCQDDMIFCGIFDGHGPWGHFVAKRVRKLIPVSLLCNWQEALAATSLDLDFKLEEDRNLHWFDLWKKSYLKTCAAVDQDLKNHARFDSFQSGATALTIIKQGKLLTIANLGDSRAVLATASEDDDGTLIPLQLTNDLKPNLPEEAERIKQCRGKVFCMEDEPGVYRVWLPNGKTPGLAISRAFGDYCVKDFGLISVPQVTQRMLTTRDQFIILASDGVWDVISNDEAVKIVASVPQKEIAAQRLVQCAAYEWKRKRRNIAMDDMSAICLFFHSSSSSYSLKTHELVK 1103
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele23g1340 1103 PANTHER PHOSPHOLIPASE D 453 504 IPR015679 -
Lele23g1340 1103 ProSiteProfiles PPM-type phosphatase domain profile. 793 1087 IPR001932 -
Lele23g1340 1103 CDD PP2Cc 793 1087 IPR001932 -
Lele23g1340 1103 ProSiteProfiles PH domain profile. 233 324 IPR001849 -
Lele23g1340 1103 Pfam Phospholipase D Active site motif 573 596 IPR001736 GO:0003824
Lele23g1340 1103 Gene3D - 219 323 IPR011993 -
Lele23g1340 1103 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 569 596 IPR001736 GO:0003824
Lele23g1340 1103 SMART pld_4 569 596 IPR001736 GO:0003824
Lele23g1340 1103 Pfam Protein phosphatase 2C 808 1064 IPR001932 -
Lele23g1340 1103 Gene3D - 779 1090 IPR036457 -
Lele23g1340 1103 SMART PH_update 198 326 IPR001849 -
Lele23g1340 1103 FunFam Probable protein phosphatase 2C 34 784 1089 - -
Lele23g1340 1103 Gene3D Endonuclease Chain A 350 628 - -
Lele23g1340 1103 Gene3D Endonuclease Chain A 456 532 - -
Lele23g1340 1103 SMART PP2C_4 786 1085 IPR001932 -
Lele23g1340 1103 Coils Coil 73 93 - -
Lele23g1340 1103 SUPERFAMILY PH domain-like 231 322 - -
Lele23g1340 1103 SUPERFAMILY PP2C-like 784 1088 IPR036457 -
Lele23g1340 1103 SUPERFAMILY Phospholipase D/nuclease 328 615 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele23g1340 Lele-ChrLele23 18484052 18496438 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele23g1340 504 605 Phospholipase D Gene Family (Wang group) AT3G16785 80.392 1.30e-43 170
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele21g0701 21 4597451 4599699 Lele23g1340 23 18484052 18496438 hybridization
Lele22g0687 22 4494891 4502328 Lele23g1340 23 18484052 18496438 hybridization