Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele23g1329 ATGGGTTACGGCGAACATGAAGGGAAGGAGAAGATCGCTGTTATTTGGTTATCTGGGATCCTCCTAGTGGCCATGGTGGCGGTTGCGTCGTCGTCGGAGGATCACGGTCATTTTTCGGTGTCTCAAAAGAACGTGGACATGCTTTGCAGTTCAACCCAATACAAAGAAACCTGCCAGCACAGCCTCGCGAAAGCATCCAACGGCACCACCGACGTTAAAGAACAGATCAAAGCCACCTTCCACGCCGCCGCCAAGGAGTTCAAGAAGTTCATCGACAACTCAACCCTCTTCCAAGAGCTTGCCAAGGACAACATGACCAAGCAGGCCATGGAAATATGCCACGAGGTGCTCGACTACGCCATTGACGACGTTAGGAACTCCATCAATAGCGTCGACCAGTTCGATATAAGCAAGCTTGGTGAATACGCTTATGATGTTAAGAACGCTTTGGACATTATCTCTGGCCTCTCCGACGTCGCCCAAGCCTTTGGATTAGTCGGTTTCGGCTTCGGCAGCGGCCAGCAGCAAGCTACTGCCGATAACAACACCGCCGGCTCCACTCGGAAGATTCTCGAGAGCTCCCCGTCCTGGGTAAGTGGTAGCCAACACCGTCACCTCCTCGCCGCGGCCGCAGCTGGTGCTGCCAATGTTAAGCCCGATGCTGTTGTGGCTCAAGACGGAAGTGGGCAGTTCAAAACACTCGGCGACGCTCTTAAAACTGTTCCGGCGAAAAATACTAAACCCTTTGTGATTTACGTTAAGGCCGGCATATATAAGGAGATTGTGAACATTCGCAAGACATCCAGTTATATCACCATCGTTGGAGATGGTCCCACCGCCACCAGATTCACCGGCAGTCTCAACTTTATCGACGGCGTCCAAACTTACAACACCGCAACATTCGCCGTGAATGCTCCTTACTTCACGGCCATGCACGTGGGGTTCGAGAACACTGCCGGAGCAAGTAAGCACCAAGCCGTGGCGCTCCGAGTAACAGCAGATAAAGCCATCTTCTACAACTGCCACATGGACGGGTACCAAGACACCCTCTACGCCCAGTCCCACCGCCAGTTCTACCGCGACTGCCAAATCTCCGGCACAATCGACTTCATCTTCGGCGACGCCGACATGGTCTTCCAGAACTGCACTTTGATCGTCAGGCCACCATTAAGCGCCCAAAGCTGCATCGTCTCCGCCAGTGGCCGCGACGTGAGCAACAGCCCCAGCGCCATGGTGTTCCAGAGCTGCCGCTTCGTGGCCGACCCTCTCTACCTCTCCGACCCAGCGAAGAAGCCGGCATACCTTGGACGACCATGGAGGGCATACGCCAAGGTGATTATCATGGATTCTTTTATCGACGGCTTCTTCGCTCCCGAAGGTTACATGTCGTGGATGGGTAGCATCTATCACATGACCGCCATCTTCGACGAGTACAACAACAAAGGTCCCGGAGCCGATACCTCTCACAGAGTGAAATGGCCCGGCGTGAAGACGATCACTTCTGCTGAAGCTGCAAATTACTATCCTCACAATTTCTATGAATTCCGCAATGCAACTAACGCTGAAGATGATTCGTGGATCTCTGCCTCCGGGATTCCCTACGCCGTTGGCCCCATGGCCGTACCAGCAAATTGA 1635 0.537 MGYGEHEGKEKIAVIWLSGILLVAMVAVASSSEDHGHFSVSQKNVDMLCSSTQYKETCQHSLAKASNGTTDVKEQIKATFHAAAKEFKKFIDNSTLFQELAKDNMTKQAMEICHEVLDYAIDDVRNSINSVDQFDISKLGEYAYDVKNALDIISGLSDVAQAFGLVGFGFGSGQQQATADNNTAGSTRKILESSPSWVSGSQHRHLLAAAAAGAANVKPDAVVAQDGSGQFKTLGDALKTVPAKNTKPFVIYVKAGIYKEIVNIRKTSSYITIVGDGPTATRFTGSLNFIDGVQTYNTATFAVNAPYFTAMHVGFENTAGASKHQAVALRVTADKAIFYNCHMDGYQDTLYAQSHRQFYRDCQISGTIDFIFGDADMVFQNCTLIVRPPLSAQSCIVSASGRDVSNSPSAMVFQSCRFVADPLYLSDPAKKPAYLGRPWRAYAKVIIMDSFIDGFFAPEGYMSWMGSIYHMTAIFDEYNNKGPGADTSHRVKWPGVKTITSAEAANYYPHNFYEFRNATNAEDDSWISASGIPYAVGPMAVPAN 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele23g1329 544 SMART PMEI_2 40 163 IPR006501 GO:0004857
Lele23g1329 544 Gene3D - 217 539 IPR012334 -
Lele23g1329 544 CDD PMEI-like_3 48 148 - -
Lele23g1329 544 Pfam Pectinesterase 220 512 IPR000070 GO:0030599|GO:0042545
Lele23g1329 544 ProSitePatterns Pectinesterase signature 1. 245 264 IPR018040 -
Lele23g1329 544 TIGRFAM PME_inhib: pectinesterase inhibitor domain 21 143 IPR006501 GO:0004857
Lele23g1329 544 SUPERFAMILY Pectin lyase-like 217 534 IPR011050 -
Lele23g1329 544 Gene3D Invertase/pectin methylesterase inhibitor family protein 40 159 IPR035513 -
Lele23g1329 544 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 43 143 IPR035513 -
Lele23g1329 544 FunFam Pectinesterase 4 217 538 - -
Lele23g1329 544 ProSitePatterns Pectinesterase signature 2. 364 373 IPR033131 -
Lele23g1329 544 PANTHER PECTINESTERASE 17 528 - -
Lele23g1329 544 Pfam Plant invertase/pectin methylesterase inhibitor 45 147 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele23g1329 Lele-ChrLele23 18414570 18416423 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele23g1329 1 540 Carbohydrate Esterase AT3G05610 39.353 2.04e-147 437