Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele23g1327 ATGGCCACCAATAATCATCCCAATCCCAATCCCTTCAACGCCAAAGGCTATGCACTCACCACCAACGTCCTCCTCACCATCACCGTCGTCCTGTTCTTCCTCATCATTCTATTGATTTCCCTTCACTTCTATGCCCGCTGGTACCTCCGCCGTGCTCGCCTCCGTCACCGTCAGGGCCGCCGTTCATATCTCGTCTTCTACGTCGACTCCTTCACCTCCGACTCCCTCCCACCCGTCGGTCTCGATCCCTCTGTCATTCAGTCTCTCCCTGTCTTCGTTTACTCCGCCAACTCCGATCCCGTAGAATGCGCTGTGTGCTTGTCCCATTTCCAAGAGAACGAATCGGGTCGGGTTTTGCCCAAATGCAACCACACTTTTCACGTCGAATGCATCGACATGTGGTTCCAGTCCCACTCAACTTGTCCGCTCTGTAGATCTTTGGTTGAACTCGTCCCGCCCGGGGGCCAACCCAGTCCGGAAGTGGTGATCGATGTGTGCGAACCGGTTTCGAGTTCAGGGTGTCGTCAGGATGGAGAAGAAGAGAACCGAAGCGGGCGGACGCTCTGTTCTTCGTCATCTTCGATTGGGCTAAGGCGGAAGCCGTCGTCCGTGGGTGTGGCAATTGACGTGCCATTTAGCAGAAGCTTGGGGAGAGAGGCGGAGGGGTCGACGACGTCGTGTAGATCACCGGGGGGTCGTATGCTATCTTTCAAGAGAATACTGAGCAGAGAGAGAAAACCAAGTACTTCGTCTTCATCGTCGGAAAATTGTGGCGTTGGTTGCAGCTCCGTGACCGAGATGTAG 804 0.5498 MATNNHPNPNPFNAKGYALTTNVLLTITVVLFFLIILLISLHFYARWYLRRARLRHRQGRRSYLVFYVDSFTSDSLPPVGLDPSVIQSLPVFVYSANSDPVECAVCLSHFQENESGRVLPKCNHTFHVECIDMWFQSHSTCPLCRSLVELVPPGGQPSPEVVIDVCEPVSSSGCRQDGEEENRSGRTLCSSSSSIGLRRKPSSVGVAIDVPFSRSLGREAEGSTTSCRSPGGRMLSFKRILSRERKPSTSSSSSENCGVGCSSVTEM 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele23g1327 267 FunFam RING-H2 finger protein ATL3 73 150 - -
Lele23g1327 267 ProSiteProfiles Zinc finger RING-type profile. 103 145 IPR001841 -
Lele23g1327 267 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 17 149 IPR044675 -
Lele23g1327 267 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 71 149 IPR013083 -
Lele23g1327 267 MobiDBLite consensus disorder prediction 246 267 - -
Lele23g1327 267 SUPERFAMILY RING/U-box 102 151 - -
Lele23g1327 267 MobiDBLite consensus disorder prediction 242 267 - -
Lele23g1327 267 CDD RING-H2_EL5_like 102 145 - -
Lele23g1327 267 Pfam Ring finger domain 102 145 IPR001841 -
Lele23g1327 267 SMART ring_2 103 144 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele23g1327 Lele-ChrLele23 18407677 18408480 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele23g1327 4 250 Rapid Response to Elicitors AT3G16720 44.484 5.80e-59 188
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele23g1327 23 18407677 18408480 Lele23g1327 23 18407677 18408480 ECH
Lele21g0718 21 4694288 4695103 Lele23g1327 23 18407677 18408480 hybridization