LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele23g1282	ATGGATTCTACGAGGGACACGGCAGTTGTTGCAGGGACGGTGCTAATCCCCATGCGGTTTGTGTGGCCATACGGAGGAAGAAATGTGTATCTCAGTGGTTCTTTTACACGGTGGTCTGAGTTTCTACCAATGTCGCCGGTCGAGGGTTGCCCAACTGTATTTCAAGTTATTTATAGCTTGACCCCTGGTTACCATCAGTACAAGTTTTTTGTTGATGGAGAATGGCGACACGATGAACACCAACCTTATGTACCTGGAGAATATGGGATAGTTAACACTGTCTTGTTGGCTACTGATCCTAATTACATGCCTGTTGTAACACCAGACCTAACTTCCGGATCAAACATGGACGTGGATAATGAGGCTTTTCGGCGTGTGGTCCGCTTGACAGATGGTACATTAACAGAAGTATTGCCGAGAATATCTGATGCTGATGTCCAGATATCCCGTCAGCGTATTACTGCATTCTTGACCATGCACACAGCTTATGAATTACTTCCCGAGTCAGGCAAGGTTGTTGCCTTGGACATTGATCTGCCAGTGAAACAAGCATTTCATGTTTTGCATGAGCAGGGAATCCCTATGGCTCCTCTTTGGGACTTCAGCAAAGAGCAGTTTGTTGGTGTTCTCAGTGCTTTGGATTTTATTTTAATTTTGAGAGAGCTTGGAAATCGTGGGTCCAATCTGACAGAAGAGGAGCTTGAGACACATACCATATCTGCTTGGAAAGAAGGAAAATCATATCTTAGTAGACAAAACAATGGACCAGGAACAGCATTTTCAAGACGTTTTGTTAGTGCTGGGCCGTATGATAATTTAAAGGATATTTCCTTGAAGATCCTGCAAAACGTAGTTTCAACTGTTCCTATTGTGCATTCATCTTCTGAGGATGGTTCATTTCCACAATTATTACATCTTGCTTCACTTTCTGGAATACTTAAATGCATTTGCAGGTATTTTAGGCATTGTACCAATACATTGCCTATTCTTCAACTACCCATTTGTGCAATTCCAGTGGGCACATGGGTGCCCAAAATTGGGGAGTCAAATCGGCAGCCCCTGGCAATGTTGAGACCAAGTTCTTCTCTTTCTTCAGCCCTAAATTTGTTAGTTCAAGCCCAAGTAAGTTCAATACCAATAGTAGACGATAATGACTCATTATTGGATATATATTGCCGGAGTGATATAACAGCTTTGGCAAAGGACAGAGCTTATACACATATCAATCTTGATGAAATGACTGTTCATCAGGCATTGCAATTGGGTCAGGATTCTTATCAGCCTTATGAAATGAGAAGTCAAAGATGTCAGATGTGCTTGCGATCTGATTCTCTGCATAAAGTGATGGAACGGCTGGCTAATCCAGGTGTCAGGCGGCTAGTCATCGTGGAAGTTGGCAGCAAGCGTGTAGAAGGCATTGTTTCACTGACTGACATATTCAAGTTCTTGCTCGGTTAG	1458	0.4294	MDSTRDTAVVAGTVLIPMRFVWPYGGRNVYLSGSFTRWSEFLPMSPVEGCPTVFQVIYSLTPGYHQYKFFVDGEWRHDEHQPYVPGEYGIVNTVLLATDPNYMPVVTPDLTSGSNMDVDNEAFRRVVRLTDGTLTEVLPRISDADVQISRQRITAFLTMHTAYELLPESGKVVALDIDLPVKQAFHVLHEQGIPMAPLWDFSKEQFVGVLSALDFILILRELGNRGSNLTEEELETHTISAWKEGKSYLSRQNNGPGTAFSRRFVSAGPYDNLKDISLKILQNVVSTVPIVHSSSEDGSFPQLLHLASLSGILKCICRYFRHCTNTLPILQLPICAIPVGTWVPKIGESNRQPLAMLRPSSSLSSALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDRAYTHINLDEMTVHQALQLGQDSYQPYEMRSQRCQMCLRSDSLHKVMERLANPGVRRLVIVEVGSKRVEGIVSLTDIFKFLLG	485

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele23g1282	485	PANTHER	AMP-ACTIVATED PROTEIN KINASE, GAMMA REGULATORY SUBUNIT	145	483	-	-
	Lele23g1282	485	SUPERFAMILY	E set domains	16	97	IPR014756	-
	Lele23g1282	485	ProSiteProfiles	CBS domain profile.	431	485	IPR000644	-
	Lele23g1282	485	Gene3D	-	333	485	IPR046342	-
	Lele23g1282	485	ProSiteProfiles	CBS domain profile.	165	227	IPR000644	-
	Lele23g1282	485	SUPERFAMILY	CBS-domain pair	153	323	IPR046342	-
	Lele23g1282	485	FunFam	Sucrose nonfermenting 4-like protein	13	98	-	-
	Lele23g1282	485	Pfam	Glycogen recognition site of AMP-activated protein kinase	16	98	IPR032640	-
	Lele23g1282	485	Gene3D	-	142	326	IPR046342	-
	Lele23g1282	485	SUPERFAMILY	CBS-domain pair	351	484	IPR046342	-
	Lele23g1282	485	ProSiteProfiles	CBS domain profile.	349	406	IPR000644	-
	Lele23g1282	485	Pfam	CBS domain	352	397	IPR000644	-
	Lele23g1282	485	Pfam	CBS domain	438	484	IPR000644	-
	Lele23g1282	485	SMART	cbs_1	435	484	IPR000644	-
	Lele23g1282	485	SMART	cbs_1	171	220	IPR000644	-
	Lele23g1282	485	SMART	cbs_1	353	401	IPR000644	-
	Lele23g1282	485	CDD	E_set_AMPKbeta_like_N	17	95	-	-
	Lele23g1282	485	Gene3D	Immunoglobulins	16	106	IPR013783	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele23g1282	Lele-ChrLele23	18111077	18117149	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele23g1282	12	106	Protein tyrosine phosphatase (PTP) family	AT3G01510	30.612	9.07e-06	46.2

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lele23g1282	23	18111077	18117149	Lele23g1282	23	18111077	18117149	ECH
	Lele21g0764	21	5011433	5017519	Lele23g1282	23	18111077	18117149	hybridization
	Lele22g0747	22	4884901	4890774	Lele23g1282	23	18111077	18117149	hybridization