Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele23g1280 ATGGAGCGATACGGCCGGGCAAGTGACGAGTCGCAGTCCGATCCGTCACCGGAATGGACTGGAACCGGAGGCGAAACGGGGCTTGAAGAATCTATTCGGCAACTGGGATTGGTTGGTGGGGAATCGTATCCACAACGGCCCGATGAGGCGGATTGTATCTACTATTTGAAGACAGGGTTTTGTGGGTATGGCTCGCGGTGTCGGTTCAATCATCCCCGTGACCAAGGCGCGGTTATAGGAGCTTCGAGGACTGGTGCGGAGTATCCAAAGCGAGTAGGCCAGCCTATATGTCAGTATTATATTAGGACAGGATCTTGCAAATTTGGTGCTTCATGTAAGTACCACCATCCTCGGCAGGGAGGAGGCGTTGCTCCTGTGTCACTTAATTATTATGGATACCCATTGCGACCGGATGAGAAAGAGTGTTCGTATTATGTGAAAACAGGACAATGCAAGTTTGGCACAACTTGTAAGTTTCATCATCCACAGCCTTCTGGTGTTCAAGTTCCTGCCCCACTACCAGTTCTCCAAGCTTCAACTCTACCTGTACGAGTACCTTCACCATTCTATCCAACTATGCAGCCTCCATCTGGTCCTTCATCACAACAATATGGTGTAATGGTTGCAAGATCGCCTCTACTACCAGGGTCTTTAGTCCGAAATCCTTATGGGCCTATGGTAATGTCTCCTGTCCCCTTTTCAGGTTGGAATCCTTATCAGGCTCCTACAAGCCCTGCAGTTCCTTCTAGTACTCCATCTAATGTTGGCTCAACACACCTTTATGGGAATACCCAGCTACCTTCACCAGGACCTGCCTATACTGCACCTTATCAACCTACAGGTTCTTCATTTGGTCCTTTAAGCACTAGTCAGAGAGAACAACATTCATTCCCAGAAAGACCTGGTCAACCAGAATGTCGGCATTACTTGAGAACAGGGGAGTGTAGATTTGGTCCGTCCTGTAGATATCATCATCCACCTGAATTGATTGTACCGAACGTGGTCCTTAGTCCTGTGGGTCTTCCTATGTGCCTGGGTGCACCGCCTTGCATTCATTATGCGCAGCAGGGAGTATGTAAGTTCGGTCCTGCATGCAAGTTTGATCATCCTATGGGAGCATTGGCTTACAGTCTATCTGCTTCTTCCCTTGTTAATATGCCAGTTGTTTCCATTCCTGTGGGTTCATCCATAAGTACTCTTGCACCATCGTCCTCATCATTGGAGTTGCAGCCTGAACTTAGCCCTTGTTCAAGCAAGGAGCACGGATCATTCAGCATGTCTTCGTCCATGAGCACATCTACTGGGTCAGTTGGCTTGGCGTTGTCATCTAGTGGAACCGTTTCAGAGTCAAATACTCAAATATCCACCCAAAGTTCTGTTCCGGTGGTGACTCCCACAATCACGACAAGCAGCGCTGTCTCTCATACCTCAAGCTAA 1437 0.485 MERYGRASDESQSDPSPEWTGTGGETGLEESIRQLGLVGGESYPQRPDEADCIYYLKTGFCGYGSRCRFNHPRDQGAVIGASRTGAEYPKRVGQPICQYYIRTGSCKFGASCKYHHPRQGGGVAPVSLNYYGYPLRPDEKECSYYVKTGQCKFGTTCKFHHPQPSGVQVPAPLPVLQASTLPVRVPSPFYPTMQPPSGPSSQQYGVMVARSPLLPGSLVRNPYGPMVMSPVPFSGWNPYQAPTSPAVPSSTPSNVGSTHLYGNTQLPSPGPAYTAPYQPTGSSFGPLSTSQREQHSFPERPGQPECRHYLRTGECRFGPSCRYHHPPELIVPNVVLSPVGLPMCLGAPPCIHYAQQGVCKFGPACKFDHPMGALAYSLSASSLVNMPVVSIPVGSSISTLAPSSSSLELQPELSPCSSKEHGSFSMSSSMSTSTGSVGLALSSSGTVSESNTQISTQSSVPVVTPTITTSSAVSHTSS 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele23g1280 478 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 48 73 IPR000571 GO:0046872
Lele23g1280 478 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 348 371 IPR000571 GO:0046872
Lele23g1280 478 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 302 327 IPR000571 GO:0046872
Lele23g1280 478 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 94 118 IPR000571 GO:0046872
Lele23g1280 478 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 138 163 IPR000571 GO:0046872
Lele23g1280 478 SMART c3hfinal6 300 327 IPR000571 GO:0046872
Lele23g1280 478 SMART c3hfinal6 138 163 IPR000571 GO:0046872
Lele23g1280 478 SMART c3hfinal6 46 73 IPR000571 GO:0046872
Lele23g1280 478 SMART c3hfinal6 344 371 IPR000571 GO:0046872
Lele23g1280 478 SMART c3hfinal6 91 118 IPR000571 GO:0046872
Lele23g1280 478 MobiDBLite consensus disorder prediction 440 460 - -
Lele23g1280 478 MobiDBLite consensus disorder prediction 244 297 - -
Lele23g1280 478 Gene3D - 289 373 - -
Lele23g1280 478 ProSiteProfiles Zinc finger C3H1-type profile. 345 372 IPR000571 GO:0046872
Lele23g1280 478 SUPERFAMILY CCCH zinc finger 347 373 IPR036855 GO:0046872
Lele23g1280 478 ProSiteProfiles Zinc finger C3H1-type profile. 91 119 IPR000571 GO:0046872
Lele23g1280 478 PANTHER PROTEIN PHOSPHATASE RELATED 38 404 - -
Lele23g1280 478 SUPERFAMILY CCCH zinc finger 304 327 IPR036855 GO:0046872
Lele23g1280 478 MobiDBLite consensus disorder prediction 411 430 - -
Lele23g1280 478 ProSiteProfiles Zinc finger C3H1-type profile. 136 164 IPR000571 GO:0046872
Lele23g1280 478 MobiDBLite consensus disorder prediction 244 305 - -
Lele23g1280 478 ProSiteProfiles Zinc finger C3H1-type profile. 300 328 IPR000571 GO:0046872
Lele23g1280 478 Gene3D - 120 170 - -
Lele23g1280 478 SUPERFAMILY CCCH zinc finger 137 164 IPR036855 GO:0046872
Lele23g1280 478 SUPERFAMILY CCCH zinc finger 48 75 IPR036855 GO:0046872
Lele23g1280 478 Gene3D - 43 119 - -
Lele23g1280 478 ProSiteProfiles Zinc finger C3H1-type profile. 46 74 IPR000571 GO:0046872
Lele23g1280 478 SUPERFAMILY CCCH zinc finger 93 119 IPR036855 GO:0046872
Lele23g1280 478 MobiDBLite consensus disorder prediction 1 26 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele23g1280 Lele-ChrLele23 18097527 18102194 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele23g1280 1 437 C2H2 Transcription Factor Family AT5G18550 53.913 2.28e-144 419
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lele23g1280 zf-CCCH 6.5e-09 CL0537
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele21g0767 21 5025837 5030357 Lele23g1280 23 18097527 18102194 hybridization
Lele22g0749 22 4897525 4902144 Lele23g1280 23 18097527 18102194 hybridization