Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele23g1279 ATGCCAAGCTCTAGATCAGCAGCCTCAGAGAACAAAACCCAAATGATGGGTTTGTCTCTTCTTCAAACCAACTCATCTTGTTTTGGTGAGAGAAGAGGAAGAAGAAAGCAAGGAGAAGCAGGCAGGTTTCTGGGTGTGAGAAGAAGACCTTGGGGAAGATATGCTGCAGAAATAAGAGACCCCACAACTAAAGAAAGACACTGGCTTGGAACTTTTGATACTGCTCAAGAAGCTGCTTTAGCTTATGACAGAGCTGCTTTGTCCATCAAAGGAAGCCAAGCAAGAACCAACTTCGTATACACTGACATCAATACAACGTTTGACAATAATCTTCTTTGTCCCTTTGATGTTCAGCTTCATCAGTCACTCTTTAACACTTCTCAGATGAAGCAGTCCACCAATCAGAACAGCTCACCTGAGCTTTCTTCTGAGACTTCCCAGTTTAAGACTGCTTCAGCGCAGGAAGCTGATAACTTATTCTTCTTCTCCAATGATGTTTCTAAATCAGGTTACTTGGAATGCATAGTTCCTGACGTCTGTTTCAGACCTTCTTCCTCTTCTTCCAATGATAGCAACAGTGCCTTAATTCCCTGTGCTGATACAAGGGACCAAAAGATATCTCAAGAAGCTGTGAAGAACATGGCCTCATCAAGCTCTGAAGATTTCACTTATCCAATAAATGAACTTATTGGTCAAGAAACAATCTGGGATTGGAGCTGCAGTGAACTTGCTGCTATATTCAACAGTCCATTAAAGGTTGACGAAGATACAGACATTTTAAGCTGTGGGATAATTTCTCAGGCTGCTGAAACTTCTTCATCAACCACTTATGCTCCATCACTTCCTTCATTTGATGTTGATTTAGCTTACCCACTCTTCTGA 882 0.4172 MPSSRSAASENKTQMMGLSLLQTNSSCFGERRGRRKQGEAGRFLGVRRRPWGRYAAEIRDPTTKERHWLGTFDTAQEAALAYDRAALSIKGSQARTNFVYTDINTTFDNNLLCPFDVQLHQSLFNTSQMKQSTNQNSSPELSSETSQFKTASAQEADNLFFFSNDVSKSGYLECIVPDVCFRPSSSSSNDSNSALIPCADTRDQKISQEAVKNMASSSSEDFTYPINELIGQETIWDWSCSELAAIFNSPLKVDEDTDILSCGIISQAAETSSSTTYAPSLPSFDVDLAYPLF 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele23g1279 293 CDD AP2 42 98 IPR001471 GO:0003700|GO:0006355
Lele23g1279 293 SUPERFAMILY DNA-binding domain 43 99 IPR016177 GO:0003677
Lele23g1279 293 FunFam Ethylene-responsive transcription factor 2 42 100 - -
Lele23g1279 293 Gene3D AP2/ERF domain 42 100 IPR036955 GO:0003700|GO:0006355
Lele23g1279 293 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 22 204 - -
Lele23g1279 293 Pfam AP2 domain 45 91 IPR001471 GO:0003700|GO:0006355
Lele23g1279 293 PRINTS Ethylene responsive element binding protein signature 43 54 IPR001471 GO:0003700|GO:0006355
Lele23g1279 293 PRINTS Ethylene responsive element binding protein signature 65 81 IPR001471 GO:0003700|GO:0006355
Lele23g1279 293 MobiDBLite consensus disorder prediction 128 148 - -
Lele23g1279 293 ProSiteProfiles AP2/ERF domain profile. 42 99 IPR001471 GO:0003700|GO:0006355
Lele23g1279 293 SMART rav1_2 42 105 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele23g1279 Lele-ChrLele23 18085694 18086575 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele23g1279 10 194 AP2-EREBP Transcription Factor Family AT5G18560 41.463 2.12e-51 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lele23g1279 AP2 3.2e-12 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele21g0768 21 5036258 5037142 Lele23g1279 23 18085694 18086575 hybridization
Lele22g0750 22 4909852 4910664 Lele23g1279 23 18085694 18086575 hybridization