Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele23g1270 ATGCGAGATCTGAACTATCGTCACCACAGAAGAAGACGGAGAAGAAGAAGATCAGACTCGACGGTAGACGGAGAAGAAGAAGACCAGATGCGAGACTATGGAAACCCAGATGACGAGAAGCAAAAAAAGGAGAAGAAGAAGACCAGACGCAAGACGATGGAAGACCAGAAGATGAGACGTAGAAGACGGAGAAGAAAAAGACGACCGATGACTATCGGTGCAAGCACTACAGGAGAAGATGCAAGATTCGGGCACCCTGTTGCAACGAACTGTACTCCTGCCGTCATTGTCATGACGAGGCAACGGTTGTTTGTTCAGTTTGTGACACAGAGCAGCCAGTTGCTCAAGTCTGCACAAACTGTGGCGTCAAAATGGGAGAATATTTCTGCAACACATGCAAATTCTTCGATGATGATACAGGGAAACAGCCGTTTCATTGTGATGATTGTGGAATCTGCAGGTACGTACTTGACATGTTTGAGTAGATTTCTATCTTCCATTACGTTCTCACTTATGTCACCTGAATATATGACTTTCTCTGCAACTAATTTTGGTGATGTAATTTATGAAACTGGAAACAGAATTGGTGGTCGTGATAACTTTTTCCACTGCAACAAGTGCGGGTCTTGCTATTCACTTGGTCTACTTGATAATCATTTATGTGTAGAGGACTCCATGAGGCATCACTGTCCGATATGTTATGAGTACCTTTTTGATTCAGTGAAGGACACTGCCGTTATGAAATGTGGTCACACAATGCATCATGAATGTTTCCAAGAGATGATAAAACGTCAAAAGTATTGTTGCCCCATATGCTTCAAGTCAGCGATTGACATGTCCATGATCTGGAAGATGATTGACGAAGAGACTGAAGCAACTCTCATGCTTGAAGATTATCGGCACAGGAAGGTTTGGATACTGTGTAATGACTGCAATGACACAACAGAAGTAAACTTCCACATAGTTGGGCAAAAATGTGGGCACTGCGGATCATATAACACTCGTGAAATTGCTCCACCTGTTCTTCCTCAATGA 1035 0.4309 MRDLNYRHHRRRRRRRRSDSTVDGEEEDQMRDYGNPDDEKQKKEKKKTRRKTMEDQKMRRRRRRRKRRPMTIGASTTGEDARFGHPVATNCTPAVIVMTRQRLFVQFVTQSSQLLKSAQTVASKWENISATHANSSMMIQGNSRFIVMIVESAGTYLTCLSRFLSSITFSLMSPEYMTFSATNFGDVIYETGNRIGGRDNFFHCNKCGSCYSLGLLDNHLCVEDSMRHHCPICYEYLFDSVKDTAVMKCGHTMHHECFQEMIKRQKYCCPICFKSAIDMSMIWKMIDEETEATLMLEDYRHRKVWILCNDCNDTTEVNFHIVGQKCGHCGSYNTREIAPPVLPQ 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele23g1270 344 Pfam Ring finger domain 229 272 IPR001841 -
Lele23g1270 344 ProSiteProfiles Zinc finger CTCHY-type profile. 165 229 IPR017921 -
Lele23g1270 344 SUPERFAMILY Zinc hairpin stack 194 223 IPR037275 -
Lele23g1270 344 SMART ring_2 230 272 IPR001841 -
Lele23g1270 344 MobiDBLite consensus disorder prediction 52 70 - -
Lele23g1270 344 ProSiteProfiles Zinc finger RING-type profile. 230 272 IPR001841 -
Lele23g1270 344 CDD RING-H2_Pirh2 229 272 - -
Lele23g1270 344 Pfam Zinc-ribbon 277 335 IPR039512 -
Lele23g1270 344 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 194 341 - -
Lele23g1270 344 MobiDBLite consensus disorder prediction 1 17 - -
Lele23g1270 344 MobiDBLite consensus disorder prediction 1 81 - -
Lele23g1270 344 Gene3D - 303 339 - -
Lele23g1270 344 SUPERFAMILY RING/U-box 229 280 - -
Lele23g1270 344 FunFam RING finger and CHY zinc finger domain-containing protein 1 301 342 - -
Lele23g1270 344 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 219 302 IPR013083 -
Lele23g1270 344 MobiDBLite consensus disorder prediction 18 51 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele23g1270 Lele-ChrLele23 18023533 18029166 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele23g1270 200 343 C2H2 Transcription Factor Family AT3G18290 43.750 5.99e-32 125
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele23g1270 23 18023533 18029166 Lele23g1270 23 18023533 18029166 ECH
Lele21g0777 21 5090530 5093368 Lele23g1270 23 18023533 18029166 hybridization
Lele22g0762 22 4990535 4993228 Lele23g1270 23 18023533 18029166 hybridization