Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele23g1264 ATGCCTTTAAGTAGGAGCATAATCCGTTATATGAGATCCAGGTCCCACCGGCTGGTCCAGGACGGTTCGGTGGAGCCCGTCGTCACCGATGGCCTGACGCAGAGCTGCTGGGCCAACATGCCACAGGAGCTTCTCAGAGAGGTGTTGGCCAGAATTGAAGAATCCGAAAGCTCTTGGCCTGCTCGCCGGAGCGTGGTGGCTTGCGCCGGTGTGTGCCGCACTTGGAGGCTCATCACGAAGGCCATCGTCAACACGCCTCAAGTTTCCTCTAACATCACCTTCCCCATCTCTGTTAAGCAGAATGGCCCGAGGGAAAATCCCATCCAGTGCTTCATAAAGCGCGACAGATCAATCCAGACATATTATTTGTTTCTCAGTTTAACTAACGCATTAGTCGATAATGGAAAGTTTCTTCTGGCAGCACGCAAGTGTAGACATGCCACCTGCACGGATTATGTCATATCTCTTGATGCTGATGATATGTCAAAGGGAAGCAACACTTATGTTGGGAAACTGAGATCAAATTTTCTGGGAACGAAGTTCACAATTTATGATGGCCAGCCACCTCACAAAGGGGCAAAGACTACAAAAAGCCGCTCTGTTAAACTGGGGAACCTAAATCAAGTTTCACCCAAGGTTTCTACTGGTAACTATCCAGTGGCATACATCTTATATGAATTAAATGTGCTAGGCTCCAGGAGAATGAAAGTTGTCATGGACAACATTCCTGCCTCTGCAATTCAACCAGGAGGGGTGAGACAACATGTGCAGACGGAGTTTTCTCCGAGCAATGTAGAAAAGGTTCCGTTATTCCCATTTTTTAGGTCAAAATCAAATAGAATTGAAAACTCTATATCTAGATCCCTGGGCAATGATGAGGTGCTGGTGTTAAAAAGTAAGCCTCCAAGGAGGCATGAACAGCTCCAATGTTGGTGTTTGAACTTCAAAGGACGAGTGACAGTTGCTTCAGTGAAGAACTTTCAGCTGGTGGCTTCCCCAGAAAATGGACCTTCTGGAGCAGAACATGAGAAGACCATCCTCCAATTTGGAAAAGTAGGGAAGGATTTGTTTACAATGGATTACCAGTACCCCATCTCAGCATTTCAGGCTTTTGCAATCTGCCTTAGCAGCTTTGAAACCAAAATTGCTCGTGAATGA 1158 0.4655 MPLSRSIIRYMRSRSHRLVQDGSVEPVVTDGLTQSCWANMPQELLREVLARIEESESSWPARRSVVACAGVCRTWRLITKAIVNTPQVSSNITFPISVKQNGPRENPIQCFIKRDRSIQTYYLFLSLTNALVDNGKFLLAARKCRHATCTDYVISLDADDMSKGSNTYVGKLRSNFLGTKFTIYDGQPPHKGAKTTKSRSVKLGNLNQVSPKVSTGNYPVAYILYELNVLGSRRMKVVMDNIPASAIQPGGVRQHVQTEFSPSNVEKVPLFPFFRSKSNRIENSISRSLGNDEVLVLKSKPPRRHEQLQCWCLNFKGRVTVASVKNFQLVASPENGPSGAEHEKTILQFGKVGKDLFTMDYQYPISAFQAFAICLSSFETKIARE 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele23g1264 385 Pfam F-box domain 37 83 IPR001810 GO:0005515
Lele23g1264 385 SUPERFAMILY F-box domain 21 79 IPR036047 GO:0005515
Lele23g1264 385 Pfam Tub family 98 380 IPR000007 -
Lele23g1264 385 ProSitePatterns Tub family signature 1. 315 328 IPR018066 -
Lele23g1264 385 PANTHER TUBBY-RELATED 26 383 - -
Lele23g1264 385 SUPERFAMILY Tubby C-terminal domain-like 86 383 IPR025659 -
Lele23g1264 385 PRINTS Tubby superfamily signature 342 361 IPR000007 -
Lele23g1264 385 PRINTS Tubby superfamily signature 315 331 IPR000007 -
Lele23g1264 385 PRINTS Tubby superfamily signature 217 244 IPR000007 -
Lele23g1264 385 PRINTS Tubby superfamily signature 152 168 IPR000007 -
Lele23g1264 385 PRINTS Tubby superfamily signature 168 192 IPR000007 -
Lele23g1264 385 PRINTS Tubby superfamily signature 297 314 IPR000007 -
Lele23g1264 385 PRINTS Tubby superfamily signature 363 385 IPR000007 -
Lele23g1264 385 Gene3D Tubby Protein; Chain A 94 385 IPR025659 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele23g1264 Lele-ChrLele23 17998072 18000968 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele23g1264 10 385 TUB Transcription Factor Family AT2G47900 65.365 4.60e-172 484
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Lele23g1264 Tub 5.8e-101 CL0395
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele23g1264 23 17998072 18000968 Lele23g1264 23 17998072 18000968 ECH
Lele21g0783 21 5117057 5119899 Lele23g1264 23 17998072 18000968 hybridization
Lele22g0768 22 5018634 5021362 Lele23g1264 23 17998072 18000968 hybridization