Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele23g1244 ATGGCGTCTTCTCCTTCTCCGAAGCCGAAAGGCTTGATTTCCTCCAATTCGTACTTAACACTTATGGCTGCGCTTATATCTGCCTCTGGTCCTACAGTTCCTCATCCCAAGTGTGTTTGGCTTCTATTGCTTTTATATCAGTCGCGTTCCTGGTCTAGCTTTTCGGAACCACCAGTACACCTGCTTAGAGCTGCAACAATCCCATCTCTTGAGGCTGGCATGGACAGATTTACAAAGACGGTTCTTTCAGCAAGGATTAAGACAGCAGTTTTCATAGGTTGCAGTAGTGGGGAAATTGAGCTTGGTTTCTCAGATATCTCTCAAGTCAGTAAAGGTGCTGAGATTCAGACAGATCTGATGAGGAACTTGTTTCCAGAAGAATTTTCTAGACAGTCCCATCTAGCTGAACTGAAGAATAATATACCTTCGTCGTGTTCATCTTCTTTGAGATCATTATGCACTGCCAGCAGTCCCGAATCCAAATCCCTCCTGCTACTCGGTAGTGATATTCCGGATGGCACTTCTTCTCTCTTGCCGGAGTTGCTGCTGCAACAAGAGAATGAACACAACGCCATAGTTAGAGCAATTATTCATGTTATATCTTCGCCTTCTTCTTCTGATAATAGACATCCACCAGAAGGAACCAGTGCTTTTACGAGGTACAGACCTTCAGAAATGTTGAGTTCCAAACCCAGTAATTTGAGCAGCAGGAACCAAAGCTTGATCAAGAGATCATTCGAATTATTCAGAGGCTTACATTTCATGAGAAATATGAGAGAGCGTTATCAAGCAAGTCGTCCCACTAGTACCCAGCTCCTTCATATTATATCAGAACGAAGAAGACGCGAGAAGCTCAACCAGAATTTTCAGGCACTTAGGTCACTACTCCCTCCAGGAACCAAGAAAGACAAAGCTTCAATACTTACAACAGCGAGGGAAACATTGAACTCTTTGGTGGTTGAGATTGAGAAGATGACCAAAGGAGATCATCAGCAAGTAGAGGCACAAATGAAAGCCAAGGAAATATTAATAAAAGATCAAGAAACGAAAACTGAAAGATTTAGTGTTCGAGTTTCAGATGTGGCATCGAGCTCATCATCAGAGGAAAGATTCATCGATCTGCAAGTGACTGTGAGAGGACAAAGATATTCTCTATCCCAGGTATTGATTCAGCTATTGGAATTCTTGGAAGGGGTTCAGAAAGTGAGCTTAGTTTCTGTAGATGCTAACACACATCATATAGCACAGGGAGCCGCCATTAATGAAGTAACTTTAAGACTCAAGATAGAGGGGAGTGAGTGGGATGAGGCTGCTTTGAGGGAAGCAGTGAGAAGGGTGGTTGCTGACCTGGCAGAGTGA 1359 0.4341 MASSPSPKPKGLISSNSYLTLMAALISASGPTVPHPKCVWLLLLLYQSRSWSSFSEPPVHLLRAATIPSLEAGMDRFTKTVLSARIKTAVFIGCSSGEIELGFSDISQVSKGAEIQTDLMRNLFPEEFSRQSHLAELKNNIPSSCSSSLRSLCTASSPESKSLLLLGSDIPDGTSSLLPELLLQQENEHNAIVRAIIHVISSPSSSDNRHPPEGTSAFTRYRPSEMLSSKPSNLSSRNQSLIKRSFELFRGLHFMRNMRERYQASRPTSTQLLHIISERRRREKLNQNFQALRSLLPPGTKKDKASILTTARETLNSLVVEIEKMTKGDHQQVEAQMKAKEILIKDQETKTERFSVRVSDVASSSSSEERFIDLQVTVRGQRYSLSQVLIQLLEFLEGVQKVSLVSVDANTHHIAQGAAINEVTLRLKIEGSEWDEAALREAVRRVVADLAE 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele23g1244 452 SMART finulus 275 324 IPR011598 GO:0046983
Lele23g1244 452 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 266 328 IPR036638 GO:0046983
Lele23g1244 452 Coils Coil 330 350 - -
Lele23g1244 452 MobiDBLite consensus disorder prediction 202 238 - -
Lele23g1244 452 CDD bHLH_AtbHLH_like 274 325 IPR045239 -
Lele23g1244 452 Gene3D - 270 345 IPR036638 GO:0046983
Lele23g1244 452 Pfam Helix-loop-helix DNA-binding domain 274 318 IPR011598 GO:0046983
Lele23g1244 452 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 269 318 IPR011598 GO:0046983
Lele23g1244 452 PANTHER TRANSCRIPTION FACTOR BHLH041-RELATED-RELATED 113 449 IPR044658 -
Lele23g1244 452 MobiDBLite consensus disorder prediction 221 238 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele23g1244 Lele-ChrLele23 17847257 17851033 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele23g1244 84 451 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G56960 38.902 1.31e-60 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lele23g1244 HLH 9.4e-11 No_clan