Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele23g1239 ATGATTTTTGCTGGCGTCGGTGCAAGTTCCAAAGAGCTAATTTCCTACATGGGGTCCTACCTAGCCAATCAAAACGAACCACGGCATAGTTTCTTTTACATCATGGCTGGAGTAGCACCCGATAGTTCACAATTTGACGCTCGTCAATATGATTCAAAAATGGAACTGCTTACAACTGACGGGCAGGACTTCTTTACTTCTTATGATGAGGTTCATGATAGTTTTGATGCCATGGGTTTGCATGAGAATCTTCTCAGAGGCATTTATGCATATGGATTTGAGAAGCCCTCGGCTATACAGCAAAGGGGAATAGTTCCCTTCATCAAGGGACTTGATGTTATTCAGCAGGCTCAGTCGGGAACTGGAAAGACAGCAACTTTCTGCTCTGGGGTTTTGCAGCAGCTTGACTATGGTTTGATGGAATGCCAGGCCTTGGTATTAGCACCAACTCGAGAACTTGCTCAGCAGATTGAGAAAGTTATGCGAGCACTTGGAGACTATCTTGGTGTGAAGGTTCATGCATGTGTGGGAGGAACTAGTGTTCGTGAAGACCAACGCATTCTATCTAGTGGTGTTCATGTTGTTGTTGGTACCCCTGGTCGTGTATTTGACATGCTGCGCAGGCAGTCACTTCGGCCAGATTACATCAAGATGTTTGTCTTGGATGAGGCTGATGAAATGCTTTCTCGAGGTTTTAAAGATCAGATCTATGATATCTTCCAGCTACTTCCATCACAGATTCAGGTGGGAGTTTTTTCGGCTACGATGCCTCCTGAGGCTCTTGAGATCACTAGGAAGTTTATGAACAAGCCTGTTAGAATTCTTGTGAAGCGTGATGAGCTAACCTTGGAGGGTATAAAACAGTTTCATGTCAATGTTGAGAGAGAGGAATGGAAGCTAGACACACTCTGTGATCTTTATGAAACATTGGCCATCACTCAGAGTGTCATTTTTGTGAACACCAGAAGGAAGGTTGATTGGCTTACTGATCAGATGCGAAGCCGGGACCACACAGTTTCAGCAACCCATGGAGACATGGACCAGAATACCAGAGATATTATTATGCGTGAATTCCGTTCTGGATCTTCTCGTGTTTTAATAACAACTGATCTCTTGGCTCGTGGTATCGATGTCCAGCAAGTGTCTCTAGTTATTAATTATGATCTTCCTACTCAGCCTGAGAACTATCTCCACCGTATTGGCCGTAGTGGGAGGTTTGGCAGGAAAGGTGTTGCAATCAATTTTGTGACAAGGGATGATGAAAGAATGCTGTTTGACATCCAGAGATTTTATAATGTGGTAATTGAGGAGCTGCCATCTAATGTTGCTGAACTCCTATAA 1341 0.4392 MIFAGVGASSKELISYMGSYLANQNEPRHSFFYIMAGVAPDSSQFDARQYDSKMELLTTDGQDFFTSYDEVHDSFDAMGLHENLLRGIYAYGFEKPSAIQQRGIVPFIKGLDVIQQAQSGTGKTATFCSGVLQQLDYGLMECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQSLRPDYIKMFVLDEADEMLSRGFKDQIYDIFQLLPSQIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVEREEWKLDTLCDLYETLAITQSVIFVNTRRKVDWLTDQMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQRFYNVVIEELPSNVAELL 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele23g1239 446 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 104 274 IPR014001 -
Lele23g1239 446 CDD DEADc_EIF4A 77 275 - -
Lele23g1239 446 PANTHER RNA HELICASE 54 430 - -
Lele23g1239 446 Gene3D - 63 281 IPR027417 -
Lele23g1239 446 FunFam Eukaryotic initiation factor 4A-II 61 280 - -
Lele23g1239 446 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 220 228 IPR000629 -
Lele23g1239 446 CDD SF2_C_DEAD 286 416 - -
Lele23g1239 446 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 285 446 IPR001650 -
Lele23g1239 446 Pfam DEAD/DEAH box helicase 98 259 IPR011545 GO:0003676|GO:0005524
Lele23g1239 446 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 142 427 IPR027417 -
Lele23g1239 446 Pfam Helicase conserved C-terminal domain 299 407 IPR001650 -
Lele23g1239 446 Gene3D - 282 446 IPR027417 -
Lele23g1239 446 SMART helicmild6 326 407 IPR001650 -
Lele23g1239 446 SMART ultradead3 92 289 IPR014001 -
Lele23g1239 446 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 73 101 IPR014014 GO:0003724
Lele23g1239 446 FunFam Eukaryotic initiation factor 4A-III 281 446 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele23g1239 Lele-ChrLele23 17811082 17816043 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele23g1239 35 446 Eukaryotic Initiation Factors Gene Family AT1G72730 87.440 0.0 750