Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele23g1237 ATGGGCGGAGACGCCACCCACTGGGACGAAAATGCTTACAGGGAAGCCATATTGAAGGAGAGGGAGATCGAAACCCGAACCGTCTTTAGAACCACTTGGGATCCCACCCAAAACCCTAACCCTGATACTCTCGTTGTTGCGTCCAGCGACGGATCCATCGCCTCCTATTCTATCCCTTCTTGCATCTCCAACCTCGTCCGTCTTCTCTCTTTTACTCTATTATCTCCGTTTGGTTTTACCAACATAAAGACACAAAAATTGTTTGCTGAACCAACTTGCTTCTTTCAAGGGCACGATGGACCTGCTTATGATGTCAAGTTTTACGGGGATGAAGAAGATTCTCTGTTATTGAGTTGTGGCGATGATGGTCGGGTTCGAGGATGGACATGGAAGGAACTTGCAGGATCAAAGGATTCATCATCTTTGCTCGGAAGTGGTATCAAGCCTTCACTTGATCTAGTGAATCCTCAGCACAAAGGTCCTTGGGGTGCCCTTTCACCTATTCCTGAGAATAATGCTATTGCTGTTGATACCAAGGGAGGATCTGTTTTCTCTGCTTCTGGTGATTCTTGTGCATATTGTTGGGATGTGGCAACTGGTAAAGTGAAAACTGTATTTAAGGGGCACTTGGACTACTTGCATTGTTTAGTTGCCCGAAACTCAGCCAGTCAGATTATAACAGGTTCAGAGGATGGGACTGCACGAATTTGGGATTGCAAAAGTGGAAAGTGTATCAAAGTGATTGATCCTGCAAAAGATTTGAAGTCAAAAGGATTTGGTTCATGGATTAGTTGTGTTGCTTTAGATGCAAGTGAGAGCTGGTTGGCTTGTAGCTATGGTCGGAATATATCACTCTGGAACCTTCCTGCTTCAGAATGCGTATCAAAGATTTCAACGGGTTCTTCTGTACAGGACATGTTATTTGACAACAACCAAATATTGGCAGTTGGTGCAGATCCTCTACTTAATCGATTTGACATGAACGGTGTGATCCTTTCTCAAATACAGTGCGTTCCTCCGTCATCTTTTTCTATCTCCTTACATCCATCAGGGATCATGGCAGTTGGAGGTTATGGATGTCTTGTGGATGTTATCTCCCAATTTGGAAGTCACATGTGCACGTTTCGCTGCCCAAGTCTTTAA 1143 0.4444 MGGDATHWDENAYREAILKEREIETRTVFRTTWDPTQNPNPDTLVVASSDGSIASYSIPSCISNLVRLLSFTLLSPFGFTNIKTQKLFAEPTCFFQGHDGPAYDVKFYGDEEDSLLLSCGDDGRVRGWTWKELAGSKDSSSLLGSGIKPSLDLVNPQHKGPWGALSPIPENNAIAVDTKGGSVFSASGDSCAYCWDVATGKVKTVFKGHLDYLHCLVARNSASQIITGSEDGTARIWDCKSGKCIKVIDPAKDLKSKGFGSWISCVALDASESWLACSYGRNISLWNLPASECVSKISTGSSVQDMLFDNNQILAVGADPLLNRFDMNGVILSQIQCVPPSSFSISLHPSGIMAVGGYGCLVDVISQFGSHMCTFRCPSL 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele23g1237 380 Gene3D - 157 379 IPR015943 GO:0005515
Lele23g1237 380 Pfam WD domain, G-beta repeat 202 238 IPR001680 GO:0005515
Lele23g1237 380 Pfam WD domain, G-beta repeat 258 287 IPR001680 GO:0005515
Lele23g1237 380 ProSiteProfiles Trp-Asp (WD) repeats profile. 95 128 IPR001680 GO:0005515
Lele23g1237 380 Gene3D - 7 152 IPR015943 GO:0005515
Lele23g1237 380 ProSiteProfiles Trp-Asp (WD) repeats profile. 206 247 IPR001680 GO:0005515
Lele23g1237 380 PANTHER THO COMPLEX SUBUNIT 6 HOMOLOG 1 377 IPR042626 -
Lele23g1237 380 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 206 238 - -
Lele23g1237 380 SUPERFAMILY WD40 repeat-like 37 366 IPR036322 GO:0005515
Lele23g1237 380 SMART WD40_4 290 326 IPR001680 GO:0005515
Lele23g1237 380 SMART WD40_4 199 238 IPR001680 GO:0005515
Lele23g1237 380 SMART WD40_4 14 57 IPR001680 GO:0005515
Lele23g1237 380 SMART WD40_4 241 287 IPR001680 GO:0005515
Lele23g1237 380 SMART WD40_4 88 129 IPR001680 GO:0005515
Lele23g1237 380 SMART WD40_4 161 196 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele23g1237 Lele-ChrLele23 17798322 17802499 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele23g1237 174 243 Eukaryotic Initiation Factors Gene Family AT2G46280 32.857 5.68e-06 45.4