Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele23g1228 ATGATGAACGGAGGAGGAAGAAGTAGTTTCCCTTTTACTCCATCACAGTGGCAAGAGCTTGAACATCAAGCTCTTGTTTTCAAGTACATGGCTTCTGGTATTCCTATTCCTCCTGATCTTGTCTTCTCCATCAAAAGGGCTTCTTTAGGTCACTCTCCTCTTTCTTCAAGGCTCTTGTCTCTCCCACCTCATCAAAACTTTGAGTGGAACAACTTGGAGATGGGGTTGGGAAGGAAGATAGATACAGAACCAGGGAGGTGTAGGAGAACAGATGGGAAGAAATGGAGGTGTTCTAAAGAAGCTTACCCAAATTCTAAGTACTGTGAGAGACACATGCACAGAGGAAATAACCGTTTGAGAAAACCTCTACAACAACAAGGATTCAAAACAACGTTAACCCCACCTACCAACAACACAGATTCCTCAACAGTCACAAAAAGTAACAGCACTCCTCATCCTTCACTCTCCCTCACTACTACCACTCATTCATCATCTTCATCCCACCACAATCCTCATTCCTTCCTCTATAATAATCACCAACCTTCATCAAGATCTTCTTCATCTGGTTTCAGCTTCTCTTTACAAGATGATACTGCTTCTCACTTGAATAGTGGTTATGTTTATGATGGGCTGAAGGAAGAGGTGGACGAGCATGCTTTCTTCACAGAGCCTTCTGGGACGATGAGAAGCTTCTCTGCTTCATCAATGGAAGATTCTTCGTGGCAACTCATGCCACTGTCAATGAACTCATCGTCTTCTTCCTCGAAACAGAGGAGTTACTCTGGTTTGTCCACCGAGCACTCCTCTTACTTGCAGCTTCCAAACCAGACGAACCAGCAAGATCAAGATTGCTACAACATGCTGGGACTGGGCAACTCAGAAGAACCTCAGAATCACAAAACTGTTCATCGTTTCTTCGATGAATGGCCCAACAAAAGCAAAAGCTCGTCGTGGCTTGATCTGGACGATAAATCATCCACCACCCAGCTTTCAATTTCCATTCCCACCACCACCACCAACTCTGATCATCACGACCATTTTCCAGGCTTCAATTTCAGAACCCACCAAGAGCTGGATACGCAAAATTTAGAATTGGGTCGCGTCGTTTTGAAACGACAACGTAACATGTTGGGTGGTGGTGCCCCTGCAAATTCATTACCTGGGCGCCTTTTGGCTTCGCCAGAGACGTTTCCTAGCAATTTGCAGAGTGGAAGTGGAAGTGCTAGTTTGATACTTTCTTCAAGCTGGAGGATGCCTATCAAATGGGTTTTGCACTGGCAGCCCAACGCAGGAACTATGGTGAATAGCCAAATTCTTAATGAAGTTTCTCAGTGCGTTGAGAGCATCAATGGCGTCAAAGACGGAAGATGGAAAGCAACTCTAACATTCTATCGACCCAATTTACGAGACCAGTCGCTACAGGCCGAATTTCCGCGTGATTTTCTGGGGATATCGCTTCTTGAGCAACCTAACAAGTACTACTTCATAATTCGCGGCCAGAAGATCGTTCTTGAAGCAGATTCTTCCATTCTGACTATAATGGAGAAGCTGCAATCGTACAAGTCCAAGGTGGCACTCAATTTTGAGGGAGTGCTGTATAAATTGGGTGACTTTCAGCTGAAAGTTGGAAAAGTTGCCCCCAATACTTCTGAAAGCCTGAGAGGAATTGTGATGGAGGTTGAGTATCTGCCCATTTCCTCTATAGAGAAATCCAGGCAAGTTATGGAAGAATTCCTTAATATATGGCGAGAAGCAGTGTCAAAAAAATCATTACCGGCATGCTACTGCGTTGGCTCAACTGTTTGCTACAGTGCAACAACAACCCGGGCAGTCTATGAGGAATTAGAAAGAGCGAATGGTTTCTATTCTCGCCTGTTACTTGAATGTCTGTTTTCTTCCCTTAAAGTAATGTCTGAATCTAGGAGAATCAAGAAGAAAAGGAGAGGATCTAAAAATTTTCTTTTGGATTCAGAAGCTCCAAAACCTGCTGCTCCAAGGAAGGTGAAATTTGCACCAAAAGCTCCACCTCGTCGAGTGCCAAAGGCAGAAGTTAAAGCGGACTTGCTGCGCCGTTTTAATGAGAGTTCAATGAGAGCAAAGCCTAAGGTACCTTTGCATGTTCCTTACACATCAAAAGTGAAATTCAAGTCACACAATTTAAATGCTTTGTATCCCTGGTTTATAGATCCCTTTCGGTATAGAAATCTCAAAATACATGATGCTTCACAAGATAAAGTTTTTCATCAAGTGTCAGCTTCGCAAGTTGCTTGTGGTGTTGTAGGTTCATCTGCTTCAATCAAAACATATGGTACTCCCTGGGGTGCAACTCAGAGTTCAGCCTTCGGTGTTAATGGTTTGAGGATTTTGCTGCAGGACTATTACAGTTATTATCCAGTTACTCTTCCTTTAAGGAGGCCGTATTCAGGAAACCCAGCCTGCTACAAAACTACAAATGAGGTTAATCCAGAGTCAAGTTTGTTTTTGCTCAAGTTGCCACCAACTTTGCCTCTGATCAAACAATCAGCTACTGCTGAAGAAGTCCAGGATGTACCTTCAAGCTTCAAACGGCCTGTAGGGGCCCAACCTGTGAAAAGGCCATGTAATCTGGGCGATTTACCATCGGGTATGTTAGGTAAACTGCTCGTATACAAGAGCGGTGCAGTAAAGCTGAAGCTTGGTGATACTCTTCATGATGTTTCCTCTGGTATGGAGTGTGTGCGTGCCCAAGATGTTGTTGCAGTCAATACTACTGAGAAGCATTGTTACTATAACTCCAGACGTGGATGCCATATTAAAGAGCGTGGCTGA 2808 0.4395 MMNGGGRSSFPFTPSQWQELEHQALVFKYMASGIPIPPDLVFSIKRASLGHSPLSSRLLSLPPHQNFEWNNLEMGLGRKIDTEPGRCRRTDGKKWRCSKEAYPNSKYCERHMHRGNNRLRKPLQQQGFKTTLTPPTNNTDSSTVTKSNSTPHPSLSLTTTTHSSSSSHHNPHSFLYNNHQPSSRSSSSGFSFSLQDDTASHLNSGYVYDGLKEEVDEHAFFTEPSGTMRSFSASSMEDSSWQLMPLSMNSSSSSSKQRSYSGLSTEHSSYLQLPNQTNQQDQDCYNMLGLGNSEEPQNHKTVHRFFDEWPNKSKSSSWLDLDDKSSTTQLSISIPTTTTNSDHHDHFPGFNFRTHQELDTQNLELGRVVLKRQRNMLGGGAPANSLPGRLLASPETFPSNLQSGSGSASLILSSSWRMPIKWVLHWQPNAGTMVNSQILNEVSQCVESINGVKDGRWKATLTFYRPNLRDQSLQAEFPRDFLGISLLEQPNKYYFIIRGQKIVLEADSSILTIMEKLQSYKSKVALNFEGVLYKLGDFQLKVGKVAPNTSESLRGIVMEVEYLPISSIEKSRQVMEEFLNIWREAVSKKSLPACYCVGSTVCYSATTTRAVYEELERANGFYSRLLLECLFSSLKVMSESRRIKKKRRGSKNFLLDSEAPKPAAPRKVKFAPKAPPRRVPKAEVKADLLRRFNESSMRAKPKVPLHVPYTSKVKFKSHNLNALYPWFIDPFRYRNLKIHDASQDKVFHQVSASQVACGVVGSSASIKTYGTPWGATQSSAFGVNGLRILLQDYYSYYPVTLPLRRPYSGNPACYKTTNEVNPESSLFLLKLPPTLPLIKQSATAEEVQDVPSSFKRPVGAQPVKRPCNLGDLPSGMLGKLLVYKSGAVKLKLGDTLHDVSSGMECVRAQDVVAVNTTEKHCYYNSRRGCHIKERG 935
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele23g1228 935 MobiDBLite consensus disorder prediction 245 266 - -
Lele23g1228 935 Pfam WRC 83 122 IPR014977 -
Lele23g1228 935 MobiDBLite consensus disorder prediction 119 192 - -
Lele23g1228 935 Pfam TATA-binding related factor (TRF) of subunit 20 of Mediator complex 418 591 IPR013921 GO:0003712|GO:0006357|GO:0016592
Lele23g1228 935 SMART QLQ_2 10 46 IPR014978 GO:0005524|GO:0005634|GO:0006355
Lele23g1228 935 MobiDBLite consensus disorder prediction 116 192 - -
Lele23g1228 935 ProSiteProfiles WRC domain profile. 81 125 IPR014977 -
Lele23g1228 935 PANTHER UBIQUITIN SPECIFIC PROTEASE HOMOLOG 49 423 595 IPR013921 GO:0003712|GO:0006357|GO:0016592
Lele23g1228 935 Pfam RNA polymerase III RPC4 825 918 IPR007811 GO:0003677|GO:0005666|GO:0006383
Lele23g1228 935 Pfam QLQ 11 44 IPR014978 GO:0005524|GO:0005634|GO:0006355
Lele23g1228 935 ProSiteProfiles QLQ domain profile. 11 46 IPR014978 GO:0005524|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele23g1228 Lele-ChrLele23 17730699 17739160 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele23g1228 11 170 GRF Transcription Factor Family AT4G37740 40.994 2.30e-32 131
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Lele23g1228 Med20 1.4e-38 CL0273
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele23g1228 23 17730699 17739160 Lele23g1228 23 17730699 17739160 ECH
Lele21g0822 21 5396391 5400047 Lele23g1228 23 17730699 17739160 hybridization
Lele22g0822 22 5423255 5426255 Lele23g1228 23 17730699 17739160 hybridization