Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele23g1221 ATGGCACGGTCACGGCAGCGGCAACCTTGGATCCTTCGCCTCTGCATCTTATTCCTGCAACTCATTTCATTTGCGACAATGGCGACACAGATGAGCAAGAAGAGAAAGTTCGTTGCCGACGGAGTTTTCTTCGCCGAGCTGAATGAGGTTCTGACTAGAGAGCTAGCTGAAGATGGATACTCCGGTGTCGAGGTTAGGGTTACCCCAATGCGCACTGAGATCATTATCAGAGCCACTCGAACTCAGAACGTTCTTGGTGAGAAGGGAAGGAGAATTAGGGAGCTGACTTCTGTTGTACAGAAGAGATTTAAGTTTCCCGAGAATAGTGTGGAACTATATGCTGAGAAGGTTAACAACAGAGGTCTCTGCGCTATTGCCCAGGCAGAGTCTCTTCGCTACAAGCTTCTTGGTGGTCTCGCTGTACGGAGGGCTTGCTATGGTGTTCTGAGATTTGTTATGGAAAGTGGTGCCAAGGGATGTGAGGTTATTGTTAGTGGAAAATTGAGGGCTCAGAGAGCTAAGTCCATGAAGTTCAAGGATGGATACATGATTTCTTCTGGGCAGCCAGTCAGGGATTACATCGACTCTGCTGTAAGACATGTACTTCTAAGACAGGGTGTTCTCGGTATCAAGGTCAGGATCATGCTTGATTGGGATCCTAAAGGAAAGCAGGGTCCCAAAACTCCTCTCCCTGATGTTGTCACAATCCATCCTCCTAAGGAGGAGGAGGAATATGGCAGGCCTGCTCCTATTCCGGCAGCAACTGATATCGAGCTTCCTGTTGTTGCTTGA 792 0.4848 MARSRQRQPWILRLCILFLQLISFATMATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVRDYIDSAVRHVLLRQGVLGIKVRIMLDWDPKGKQGPKTPLPDVVTIHPPKEEEEYGRPAPIPAATDIELPVVA 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele23g1221 263 SUPERFAMILY Ribosomal protein S3 C-terminal domain 119 217 IPR036419 -
Lele23g1221 263 Pfam KH domain 46 119 IPR004044 GO:0003723
Lele23g1221 263 Gene3D - 119 245 IPR036419 -
Lele23g1221 263 TIGRFAM uS3_euk_arch: ribosomal protein uS3 34 236 IPR005703 GO:0003735|GO:0006412|GO:0015935
Lele23g1221 263 CDD 40S_S3_KH 41 121 - -
Lele23g1221 263 FunFam 40S ribosomal protein S3 119 253 - -
Lele23g1221 263 Pfam Ribosomal protein S3, C-terminal domain 132 214 IPR001351 GO:0003735|GO:0006412
Lele23g1221 263 ProSitePatterns Ribosomal protein S3 signature. 173 209 IPR018280 -
Lele23g1221 263 SUPERFAMILY Prokaryotic type KH domain (KH-domain type II) 36 125 IPR009019 GO:0003723
Lele23g1221 263 PANTHER 30S/40S RIBOSOMAL PROTEIN S3 32 224 - -
Lele23g1221 263 Gene3D - 24 117 IPR015946 -
Lele23g1221 263 ProSiteProfiles Type-2 KH domain profile. 47 118 IPR004044 GO:0003723
Lele23g1221 263 FunFam 40S ribosomal protein S3 27 118 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele23g1221 Lele-ChrLele23 17680235 17683034 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele23g1221 27 251 Cytoplasmic Ribosomal Protein Gene Family AT5G35530 89.333 6.00e-150 417