Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele23g1199 ATGTTAACAATACCTCAAAGAGACATGCATTCTCCAACCCTTTGGATTCAGCCTCCTGTAGATTATTCACAACTATCAGCACTTGTTATGAGCAAAGGTTTTAATCAGAATAGGTCCAATAGGAAAAGGCAAGTGTGTAAGCGGGATCCTGCTGGAGAAGGTGAAGGTTGCAAGCACTCAGAGTGTTTGAAGCTGGGACCTTGCTCCTGTCAAAAATGCAACAATAAGCCAATTTATACAGACATTGCTCTTGCAGTCTCGTACCCCTCTTGCATTTGCTCCCAAAGTCATCAGAAAGTTGGGTGGATGTACGGTGGATGTGGCACAAAAGAAAAACACATCGACGGTGGATTATGTAAGGAGGATCGTCTTCGTAATCCGAGAGAAAAATATTCTCCCGCGCTTTTGTTTAAGAGGCGGAGGACGACGAAAGCCTGGCCGCAGAGAAGAGGGCAGCGCCTCTCTCTCAAGTCTCAGTTCTCTCTCAGCATGGACGCGCCTGAAGATTCAAACCCAATTGATGCTCTTTTCCCTAACTTAGAGGATTCATTTGTATTCAAGTATATGAGTGAACTTTCTCCAATAAAACCAGATAATCCTGTTCACCATAATCATCAGGAATTAACCTTCACAAGCTCTTGGTCCTCTCCATCTGTTTTCACATCACCCCATGCTTCATATCGCAGCCAAACTCCTTTGTTGGATGCACCACAACCAAACGTTTCATTTGAACAACGTGGCTTGCAAATAAGTTCAGGTGGTGAAGCCACTGTTTCTGTTTCATGCGCAAATCATGCACATATTCATGACTCAAGTGAGCTACAGGAAAATAATACTCATCAAGGAGGGAATGATTTGGTTGAGCAGTTAAGTAGCAAATGTACAATTGATATACCACAAGTTTCAATGTATGATTGTTGTAGCCCTGGTTTTGACGAGACAATTTCTGTTGAGCCGCGATTATTCGCGCCGGTGTCAGAAATTGAAGGGCCACGTTGTAATTGGGAGAGTATAACTACTCCCAATGTAATGCAAAACTCATTGGATCATCCCACAATTGGGCCTGGTAATTTTATGCCTCAATTACCACCACAAAATACCTTTAGGAACTCGCAGTACACTGTCAATTCACGGCATGAAATTAGATATCATACTTCTAATCCCGAAGTAGCCACAGAGGTTGAGCAAATGCAGAATAATCGTTTCAATTTTTCTGCGATGGCTAGCAACTTCAGTAAGAGAACGCATAATGAGCATATTTCTACGACACATCAGCGCATGTTGAGGCACTCTCTAGACTATGGCATGGCTAGAATGCAGAGGAGCGATTCAAATACTGCTTACAGTACATCATCACAATCTTTAAAGTGGAATGTTCCTAATGACAAGTGGTTGGTTCCTACAACAGGTGATGTTAATTCACATATGTGCATTATGCCGGGAACCGGTTCGTCCATTATGAACAATGGATGGCCTTCTACAAGACAACCTGGTTTGTCCAACTCAGCTCCTTCCTTGCATCATCTCTCTACAAGCCAACAGCTTGATAACAGATCATCAATGTCTCTAACACCTCAAAGAGACTTGCATTCCCAATATATTTGGACTCATCATCATGTAAATTATTCACAACCATCAGCACTTATTATTGGTGAAGGTTTTGACCAGAATAAGTACAATAGGAAAAGGCAAGTGCGTAAGCGGGAGCTTGCTAGAGAAGGGGAAGGTTGCAAGAATTGCAAATGCAATCACTCAAAGTGTTTGAAGCTTTACTGCGAGTGCTTCGCTTCGCATGTCTACTGCACGGGACCCTGCTCCTGTCAAAAGTGCTTGAACAAGCCAATTTATGAAGACACTGTACTTGCAGCTCGCAAGGCCATTGAGTCTCGTAACCCCCTCGCATTTGCTTCTAAAGTCATCAGAAATGCGGATTCTTTACCTGAAACTTGGGTTGACCCAAACAAAACTCCTCTAGCACGACACAGAAGAGGATGCAGCTGCAAGAAATCTGGGTGTCAAAAGAAATACTGTGAATGTTATCAGAATGGAGTTGGTTGCTCCCTTAGATGTAGATGTGAAGGATGCAAGAACGCATATGGGAGAAATGATGGTTCTTCTAAATTAAGAACAGAAGCTGAAACCGAAAGAAAAGATCAATCCTGTGAAATGCTTGTGGCAGAGAAAGTTTTAGAGATAAATGAAGGCCATTCAAATTCTGCAGCTCCTTTCCGAACACCTTCAAGGCCTTACAGATCAAGAGCTCCATCGCACAGTTCATCAAGGAGAAAACAACATAGTAATTTCTTCATTCCAGTTGATTTTGAATTTCATGCAAGCCAAAGACCTAGTAATGAAACTATTCTTCATAATCAATTACACTTTGAATACATTTTTCAAAGTAATCCAGAACTGGAAATGCCAGAGATTCAACAAGTTGGGGATGATGGTTCTTTTATCACATTCATCAACAATACTTCTAATAGTGTTAGTCAGATAATCAATCATCCTAGCCCTCCATTTTCATCTCCCAACCCTCATCAATAG 2544 0.4182 MLTIPQRDMHSPTLWIQPPVDYSQLSALVMSKGFNQNRSNRKRQVCKRDPAGEGEGCKHSECLKLGPCSCQKCNNKPIYTDIALAVSYPSCICSQSHQKVGWMYGGCGTKEKHIDGGLCKEDRLRNPREKYSPALLFKRRRTTKAWPQRRGQRLSLKSQFSLSMDAPEDSNPIDALFPNLEDSFVFKYMSELSPIKPDNPVHHNHQELTFTSSWSSPSVFTSPHASYRSQTPLLDAPQPNVSFEQRGLQISSGGEATVSVSCANHAHIHDSSELQENNTHQGGNDLVEQLSSKCTIDIPQVSMYDCCSPGFDETISVEPRLFAPVSEIEGPRCNWESITTPNVMQNSLDHPTIGPGNFMPQLPPQNTFRNSQYTVNSRHEIRYHTSNPEVATEVEQMQNNRFNFSAMASNFSKRTHNEHISTTHQRMLRHSLDYGMARMQRSDSNTAYSTSSQSLKWNVPNDKWLVPTTGDVNSHMCIMPGTGSSIMNNGWPSTRQPGLSNSAPSLHHLSTSQQLDNRSSMSLTPQRDLHSQYIWTHHHVNYSQPSALIIGEGFDQNKYNRKRQVRKRELAREGEGCKNCKCNHSKCLKLYCECFASHVYCTGPCSCQKCLNKPIYEDTVLAARKAIESRNPLAFASKVIRNADSLPETWVDPNKTPLARHRRGCSCKKSGCQKKYCECYQNGVGCSLRCRCEGCKNAYGRNDGSSKLRTEAETERKDQSCEMLVAEKVLEINEGHSNSAAPFRTPSRPYRSRAPSHSSSRRKQHSNFFIPVDFEFHASQRPSNETILHNQLHFEYIFQSNPELEMPEIQQVGDDGSFITFINNTSNSVSQIINHPSPPFSSPNPHQ 847
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele23g1199 847 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 164 809 IPR044522 GO:0003700
Lele23g1199 847 SMART CXC_2 660 701 IPR033467 -
Lele23g1199 847 SMART CXC_2 575 616 IPR033467 -
Lele23g1199 847 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 663 698 IPR005172 -
Lele23g1199 847 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 578 613 IPR005172 -
Lele23g1199 847 MobiDBLite consensus disorder prediction 735 764 - -
Lele23g1199 847 ProSiteProfiles CRC domain profile. 576 700 IPR005172 -
Lele23g1199 847 MobiDBLite consensus disorder prediction 490 519 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele23g1199 Lele-ChrLele23 17525219 17530671 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele23g1199 417 751 CPP Transcription Factor Family AT3G22780 42.899 7.31e-68 237
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CPP Lele23g1199 TCR 1.6e-10 No_clan