Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele23g1195 ATGGCTCGTGACGGGAGCGTTGTGCCGGCCGACCCGCAGGCTCTGGTGGCTGTGAAGAAGAAAACGCAGTCATCAAGGAGTTGGATTCTTTTCGATTCCACAGGTCAGGGCAGCATTCTCGACGTCGACAAGTATGCCATCATGCATCGAGTTCAGATTCATGCTCGTGATCTTCGGATTCTCGATCCTCTACTCTCCTACCCGTCTACGATATTGGGTCGAGAAAAAGCTATTGTTCTTAACTTGGAGCATGTCAAAGCAATTATCACTGCTGAAGAGGTATTGCTGAGAGATCCAACAGATGAAAATGTGGTCCCTGTTGTTGAGGAACTTCAAAGACGGTTGCCTAATGCAAGTGCCAATAATCTCCAAAGAGGAGATCGTAAAGAGTATGACATGGAAGCAGCTGAGGAAGATGGGTCACCCTTTGAATTCCGTGCCTTGGAGGTAGCTTTAGAAGCCATTTGTAGTTTCCTTGCTGCACGCACAACAGAATTGGAGATGGCTGCTTATCCTGCATTAGATGAACTTACCTCCAAGATTAGTAGTCGTAATTTGGACCGGGTACGGAAAATAAAAAGTGCAATGACTAGATTGACTGCTAGGGTTCAAAAGCTCAGTTGGCTGACCCTTTTCTCTCCTCAACTCAACATTGAAAGTGAAGAAGCCACCCTTCATCCCAACAACATGGGGTGGTTCAACAAAGGATGTGTGTGTGTGTGTCTCTGTCTCGATATAAGAAGAGAAGGATGCTTCCTTGTTTGCTTTATGAAATCTCCTTGTGTTGATTCTCATGGTTTGTCAAAGCACTATGACGTGTTTAGTGAAGGCTACCACAGTTCCTATGACCACCATGGCTATGTCTCCGGCAGTAAAGGGTTCTCATTTGGAGGGGTTCATCTGTTTTCAAACAGATCAAAGCCCTTGCACCACCACCGCCACTATGGGCATGGGCATGGGCTTTTCTTGAAGGAGAACAAATTTGAAGTGGACGAGGAGGTGCATGATGGTGAAGGTGAGATGAAAGTGGATGAAATGAGATACACGTACCATAGCGGTGGTGGTGACTTCTGCACTTTAAATGTTGAGGAGGGAAAAAAGTTAGCCCAAAGCTGCAATGTGGTTTGTAGAATTCTGTTCAGTCAAAGCAACAGATGGATTTTAATAAACTGGAGGCACAGAAGACATAACCGAAGTGGAGAGAATCAAAATGCAAAGGTTAGAGATGAGCTTGAACAATTACTGGATGACGACGACGACATGGCTGACCTATACTTGTCAAGAAAGTTAGGCTCATCTTCGCCAGTTAGTGGATCAGGTCCTGCCAATTGGTTTCCTGCCTCCCCCACCATTGGATCGAAGATATCCAGAGCGAGTAGAGCAAGTGTAGCAACAATGCGTGGCGATGAAGATAATGTGGAGGAGCTTGAAATGTTACTGGAGGCTTACTTCATGCAAATTGATGGCACATTGAACAAATTATCTACGCTCCGGGAGTACATTGATGATACAGAAGATTACATTAATATTCAGCTTGACAACCATCGTAATCAGCTTATCCAGTTAGAGCTCTTCCTGAGTTCAGGAACTGTCTGTATGTCCGTCTATTCTTTGTTGGCTGCAATATTTGGCATGAATATCCCGTACACTTGGAACGAGAACCATGGTTACATGTTCAAATGGGGAGGTGCTTTTGTGAGTTTGTTATGTGTTTGTCGTTTATCAGAGACAGCGACGGAGGAGCAGAGAATGAAGACCATGACAGCGACTGAGACACAAACAACCTCGAAGGTCAGGAGGACCAAGATTGTGCCATGCTTAACGTGTCCTTTGTGTAATAAATTCTTCAGAGAAGCAACCACTATCTCAGAGTGCATGCATACCTTTTGCAAGGAATGCATATGGAAGAAGTTCAGCGATGAGTGTAAGACGCATTGTCCAGTATGCGATAAAGACCTGGGTTGTTATCCACTGGATAGGCTAAGGCCAGACAATGCTCTTCAAGATTTGAGGGATAAAATTTTCCCTGATGAGGAAAAAACTGCCAAGGCACCTGAAAGTGTGCCCGTGCCTGCGCCTGTGCCTGAGCCTGTGCCTTCCTTTCCATTGCCAACCAATTCCAAGAAAAAGGAGAGGTCTCTCTCTTCCTTAAGCACCAGTCCAAATAAGCTATCCAGCCATTCTTGTATAGTTGAAAGAAGGGAGAAAGCCGCGGCGAAAAAGTTTTTGGATGAACAAGAATCTGCTCTCGCCGCCTTTCAACTTGAGAAAAGATCAGCTGGTAAGAAACATGGAAGAATGAATGGGGTAGAAATTTCGGAAGGGGATAAAACTTTATCAAGAACAAAATCTGTAGCAAGGAAAACATCCATTCCAAAAGAATACATTCCCTCTACTAGTCAACCTCAGACTCAGAAAGTTGCAGAAGATAACAAGACAGACCAGGAGCACTGTCAGAGTGAAACTGAAAATGTGACAAGTGAAATTGAGAATCAGAAGACTTCCTTAGAACCTGATTTGAACGAGCAAATAGTGCCCAATGAAGAAAATTCTGAGAAAAATGCCGCGTCATGGAAAGGAAAAGCTGCTATGTGGGAGCCGTTAAACTGCCTGATGGAAGCTGTAGAAAATGCAAGGTCTTTAGAGTCCAACAATATGCAAGAAAATGCGAAGTCTATTATAGAGTCCAACAATATGCAAGAAAATGCTAATATTGCAGTGCCTGTTGAATCTAGCAACAACGACTCCAATCCTACCAAAATTATGGCAGCTACTGATCAAAATGAGGCAACTCCGGTTCAACCAGAGCCCATCAAAATTAAGACGTTGAGGATCAAACAACATAGAAGAGTCAAATTTGCTCATGACTTAAATGTTCCTGCAGAACTTGTAGCTGTTAATGTTCCTGCAGAACCTGTGCCTGTTAAAGTTCCTGCAGAAGCTGTGCCTGTTAAAGTTCCTGCAGAACCTGTGCCCGTTAAAGTTCCTGCAGAACCTGTGCCCGTTAAAGTTCCCGCAGTACCTGTACCTGCTGCTTCATGCAGCATAATCAACGAAAGAATCACTCCAATATGGTTCTCTTTAGTTGCTTCTGAAGAGAAGGATGTACGTGCTAGCTTGCCTCAGATACCTTCCCGCTACCTGAGGGTCAAGGATGTGAATTTACCTGTTTCATTCATCAAGAAGTATGTAGTGAAGAAGCTTGGTCTTGCAATAAGTGAAGCTGAGGTGGAACTCTCATTAAGAGGGAAGCCATTGTCATCTTCACTGCAACTGAAGCATGTACTAGAGATGTGGTTAGAGACAGTGCCAAAATCTGAGACGATTCATACCTTTGCTGGGGACTCTGCAAAGGAGTTTGTGATGGTTCTTTCGTATGGTCGAAAGGTTTAA 3393 0.4415 MARDGSVVPADPQALVAVKKKTQSSRSWILFDSTGQGSILDVDKYAIMHRVQIHARDLRILDPLLSYPSTILGREKAIVLNLEHVKAIITAEEVLLRDPTDENVVPVVEELQRRLPNASANNLQRGDRKEYDMEAAEEDGSPFEFRALEVALEAICSFLAARTTELEMAAYPALDELTSKISSRNLDRVRKIKSAMTRLTARVQKLSWLTLFSPQLNIESEEATLHPNNMGWFNKGCVCVCLCLDIRREGCFLVCFMKSPCVDSHGLSKHYDVFSEGYHSSYDHHGYVSGSKGFSFGGVHLFSNRSKPLHHHRHYGHGHGLFLKENKFEVDEEVHDGEGEMKVDEMRYTYHSGGGDFCTLNVEEGKKLAQSCNVVCRILFSQSNRWILINWRHRRHNRSGENQNAKVRDELEQLLDDDDDMADLYLSRKLGSSSPVSGSGPANWFPASPTIGSKISRASRASVATMRGDEDNVEELEMLLEAYFMQIDGTLNKLSTLREYIDDTEDYINIQLDNHRNQLIQLELFLSSGTVCMSVYSLLAAIFGMNIPYTWNENHGYMFKWGGAFVSLLCVCRLSETATEEQRMKTMTATETQTTSKVRRTKIVPCLTCPLCNKFFREATTISECMHTFCKECIWKKFSDECKTHCPVCDKDLGCYPLDRLRPDNALQDLRDKIFPDEEKTAKAPESVPVPAPVPEPVPSFPLPTNSKKKERSLSSLSTSPNKLSSHSCIVERREKAAAKKFLDEQESALAAFQLEKRSAGKKHGRMNGVEISEGDKTLSRTKSVARKTSIPKEYIPSTSQPQTQKVAEDNKTDQEHCQSETENVTSEIENQKTSLEPDLNEQIVPNEENSEKNAASWKGKAAMWEPLNCLMEAVENARSLESNNMQENAKSIIESNNMQENANIAVPVESSNNDSNPTKIMAATDQNEATPVQPEPIKIKTLRIKQHRRVKFAHDLNVPAELVAVNVPAEPVPVKVPAEAVPVKVPAEPVPVKVPAEPVPVKVPAVPVPAASCSIINERITPIWFSLVASEEKDVRASLPQIPSRYLRVKDVNLPVSFIKKYVVKKLGLAISEAEVELSLRGKPLSSSLQLKHVLEMWLETVPKSETIHTFAGDSAKEFVMVLSYGRKV 1130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele23g1195 1130 MobiDBLite consensus disorder prediction 688 702 - -
Lele23g1195 1130 SMART ring_2 609 649 IPR001841 -
Lele23g1195 1130 Coils Coil 871 891 - -
Lele23g1195 1130 Gene3D Magnesium transport protein CorA, transmembrane region 362 519 - -
Lele23g1195 1130 ProSiteProfiles Zinc finger RING-type profile. 609 650 IPR001841 -
Lele23g1195 1130 MobiDBLite consensus disorder prediction 761 783 - -
Lele23g1195 1130 CDD RING-HC_PCGF 607 650 - -
Lele23g1195 1130 FunFam Magnesium transporter MRS2-1 16 99 - -
Lele23g1195 1130 MobiDBLite consensus disorder prediction 809 823 - -
Lele23g1195 1130 MobiDBLite consensus disorder prediction 761 834 - -
Lele23g1195 1130 Coils Coil 397 417 - -
Lele23g1195 1130 Gene3D - 14 99 - -
Lele23g1195 1130 SUPERFAMILY RING/U-box 604 675 - -
Lele23g1195 1130 Gene3D Magnesium transport protein CorA, transmembrane region 105 208 - -
Lele23g1195 1130 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 592 691 IPR013083 -
Lele23g1195 1130 MobiDBLite consensus disorder prediction 706 727 - -
Lele23g1195 1130 MobiDBLite consensus disorder prediction 677 727 - -
Lele23g1195 1130 PANTHER RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL 17 206 IPR039204 -
Lele23g1195 1130 MobiDBLite consensus disorder prediction 793 808 - -
Lele23g1195 1130 CDD Mrs2_Mfm1p-like 28 206 IPR039204 -
Lele23g1195 1130 Pfam Zinc finger, C3HC4 type (RING finger) 609 649 IPR018957 GO:0046872
Lele23g1195 1130 ProSitePatterns Zinc finger RING-type signature. 625 634 IPR017907 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele23g1195 Lele-ChrLele23 17487827 17503898 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele23g1195 440 561 MRS2 Gene Family AT5G64560 82.787 4.48e-66 226