Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele23g1193 ATGGAACCCGGGGCCCCTCCTCCAACCCCCCTCCTCGGCAAATACCAATTGACGGATTCGCTCGGTCGTGGAAGCTTCGCTAAGGTTTATCGTGGACAATCTTTGGCCGATGGCTCCACCGTCGCCGTTAAGATCATCAATAAGCATAAAATCATTGAGTCTTCTCTGGAAGACAGGATTGTGAGCGAAGTCAACGCAATGTATCGCCTCCATGAACATCCGAACATCCTCAAAATCTACGAAGTCATGGCCACAAAATCCAAAATCTTTCTTATCATTGAGTATGCACCCGGCGGCGACCTCTCCTCTAAAATCATAAGGAAGGGCCATTTTAAAGAGAAGTTAGCTCGCCGTTACTTCCAGCAACTAGTCTCCGCTCTTTGTTTCTGTCATTGGAACGGCGTGGCTCACCGTGACATCAAGCCTCAGAACCTTCTCTTGGATAAAGACGGCAATTTAAAAGTCTCCGATTTCGGGCTTTCCGCTTTATCGGAAAGTCTTCGAGACCATTTGCTCCGCACAGCTTGCGGTACTCCGGTTTTCACCGCCCCGGAGATACTCCGGCATCAAAGTTACTCCGGCCCCAAAGCCGATGCGTGGTCTTGTGGGCTCGTGCTATACGTCATGCTCACCGGACGTCTCCCGTTCGATGACTACTATAACATCCCGGCGATGTGCAGGAAGATTGGCATGCGCGATTATAAATTTCCAGACTGGGTTTCAAAGCCGGCACGCCGAGTTATCTACGGTCTACTTGAGCCGAATCCGTTCAAGAGGACAAGCCTTGAATCGCTGTATGAGGTACCGTGGTTCAAGAAATCACTAAAACCAGAAATTGAAAGGAGTGCGTTCAGATCAGGATGGGATTTGTGTGAGAAATCTGAGGCGGGGTTGAATGCTTTTGATATAATATCAATGTCTAGGGGTTTGGATTTGAGACCTCTATTTGAAACGAGGTTGGAGAAGAGGTTCACGTCGAACGTGAAAAAGGAGGTGGCGTCGGAGAAAGTGAAAGAAATTGGGGTGGGTTTAGGTTTTAAGATTGAAGAAGGGAAGAATGGTTTAATTGGAATGGGGAAAGAGAAAGTGGTCATAATCGTTGATGTGTTTGAGATTGTGGAAGATTTGTTGGTGGTGACTCTGAAAGTGGATGGAGGTGGTTTAGATTTTGAGGAAATTTACTGGAAAGATTGGAAAGTTGGACTTGAAGACCTTGTTCCTTCTTGGCTCGACGAAGAAAAGCAACGTGAATGA 1254 0.4721 MEPGAPPPTPLLGKYQLTDSLGRGSFAKVYRGQSLADGSTVAVKIINKHKIIESSLEDRIVSEVNAMYRLHEHPNILKIYEVMATKSKIFLIIEYAPGGDLSSKIIRKGHFKEKLARRYFQQLVSALCFCHWNGVAHRDIKPQNLLLDKDGNLKVSDFGLSALSESLRDHLLRTACGTPVFTAPEILRHQSYSGPKADAWSCGLVLYVMLTGRLPFDDYYNIPAMCRKIGMRDYKFPDWVSKPARRVIYGLLEPNPFKRTSLESLYEVPWFKKSLKPEIERSAFRSGWDLCEKSEAGLNAFDIISMSRGLDLRPLFETRLEKRFTSNVKKEVASEKVKEIGVGLGFKIEEGKNGLIGMGKEKVVIIVDVFEIVEDLLVVTLKVDGGGLDFEEIYWKDWKVGLEDLVPSWLDEEKQRE 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele23g1193 417 SUPERFAMILY Protein kinase-like (PK-like) 12 305 IPR011009 -
Lele23g1193 417 Gene3D Transferase(Phosphotransferase) domain 1 99 288 - -
Lele23g1193 417 CDD STKc_AMPK-like 14 270 - -
Lele23g1193 417 FunFam Maternal embryonic leucine zipper kinase 8 291 - -
Lele23g1193 417 FunFam Non-specific serine/threonine protein kinase 5 97 - -
Lele23g1193 417 SMART serkin_6 15 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele23g1193 417 ProSiteProfiles NAF domain profile. 293 317 IPR018451 GO:0007165
Lele23g1193 417 ProSitePatterns Protein kinases ATP-binding region signature. 21 44 IPR017441 GO:0005524
Lele23g1193 417 CDD CIPK_C 299 402 - -
Lele23g1193 417 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 12 376 - -
Lele23g1193 417 Pfam NAF domain 298 349 IPR004041 GO:0007165
Lele23g1193 417 Gene3D Phosphorylase Kinase; domain 1 6 98 - -
Lele23g1193 417 ProSitePatterns Serine/Threonine protein kinases active-site signature. 135 147 IPR008271 GO:0004672|GO:0006468
Lele23g1193 417 ProSiteProfiles Protein kinase domain profile. 15 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele23g1193 417 Gene3D Kinase associated domain 1, KA1 295 407 - -
Lele23g1193 417 Pfam Protein kinase domain 15 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele23g1193 Lele-ChrLele23 17475030 17476283 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele23g1193 3 412 Miscellaneous Gene Families AT3G23000 52.267 4.72e-139 402
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Lele23g1193 Pkinase 6e-67 CL0016