Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele23g1176 ATGGTGACTGGTGACAATTTAAAGACTGCTAAATCTATTGCTGTAGAGTGTGGAATACTTGGATCATTGGCAGAAGCTGTGGAGCCATTCATCTTTGAAGGAAAAGTGACAAACATCATTGAAGGAAAAGAGCCAAACATCATTGAAGGAAAATCATTTCGTGCATTGTCAGATGAACAGAGAGAACAAATTGCCCAAAGTTTAATTGTTATGGGACGATCTTCTCCTAATGACAAGCTTCTGCTTGTGCAAGCATTGAGGAAGAAGGGGCATGTTGTGGCTGTTACTGGAGACGGAACCAATGATGCTCCTGCCCTACATGAGGCCGATATAGGTCTTGCAATGGGTATTCAAGGGACAGAAGTTGCCAAGGAGAGTTCAGATATCATTATTTTGGACGACAACTTTGCTTCGGTAGTGAAGGTTGTCAGATGGGGGCGTTCTGTATATGCAAATATTCAGAAATTTATCCAGTTCCAACTTACTGTCAATGTTGCAGCTCTTGTTATCAATGTTGTTTCTGCAGTTTCCTCTGGCAATGTCCCACTAAATGCAGTACAGCTTCTTTGGGTAAATCTTATCATGGATACACTTGGAGCATTAGCCTTGGCAACTGAACCACCTACAGATCATTTGATGGATAGGAATCCAGTAGGTAGAAGTGAACCTCTTATAACACACTACATGTGGAGGAATCTGCTTATACAGGCAGCGTATCAAGTGTCTGTTTTGCTTGTTCTGACTTTCCGAGGCACCACTTTATTGAATCTGAAGCATCACTCTGACGCTACCATGGTGAAGAACACTCTCATATTCAATGCATTTGTTCTCTGTCAAGTCTTTAATGAATTTAATGCTAGAAAGCCAGATGAAAAGAATATATTCAGGGGAATCACAAAAAACTACCTCTTTATAGGGATAGTAGCTTTAACTCTCGTACTTCAGGTTATCATCATTGAATTCCTGGGCAAGTTCACTTCGACAGTGAGGCTTAATTGGAAGCAGTGGCTCATCTGCCTTATCATTGGAATTATCAGCTGGCCTCTTGCTTTTATTGGGAAATTCATACACGTGAAAAGGAGTAATTGTCACAAGATCTTTTATAAGTTGTTCTCCAAGCCACCAATACCATGA 1134 0.4074 MVTGDNLKTAKSIAVECGILGSLAEAVEPFIFEGKVTNIIEGKEPNIIEGKSFRALSDEQREQIAQSLIVMGRSSPNDKLLLVQALRKKGHVVAVTGDGTNDAPALHEADIGLAMGIQGTEVAKESSDIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVAALVINVVSAVSSGNVPLNAVQLLWVNLIMDTLGALALATEPPTDHLMDRNPVGRSEPLITHYMWRNLLIQAAYQVSVLLVLTFRGTTLLNLKHHSDATMVKNTLIFNAFVLCQVFNEFNARKPDEKNIFRGITKNYLFIGIVALTLVLQVIIIEFLGKFTSTVRLNWKQWLICLIIGIISWPLAFIGKFIHVKRSNCHKIFYKLFSKPPIP 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele23g1176 377 FunFam Calcium-transporting ATPase 113 360 - -
Lele23g1176 377 PRINTS H+-transporting ATPase (proton pump) signature 96 112 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Lele23g1176 377 PRINTS H+-transporting ATPase (proton pump) signature 128 153 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Lele23g1176 377 SUPERFAMILY HAD-like 1 201 IPR036412 -
Lele23g1176 377 Gene3D - 142 354 - -
Lele23g1176 377 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 62 177 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Lele23g1176 377 Pfam haloacid dehalogenase-like hydrolase 1 110 - -
Lele23g1176 377 SUPERFAMILY Calcium ATPase, transmembrane domain M 146 360 IPR023298 -
Lele23g1176 377 Gene3D - 1 141 IPR023214 -
Lele23g1176 377 PANTHER CATION TRANSPORTING ATPASE 1 358 - -
Lele23g1176 377 Pfam Cation transporting ATPase, C-terminus 181 356 IPR006068 -
Lele23g1176 377 PRINTS P-type cation-transporting ATPase superfamily signature 96 115 - -
Lele23g1176 377 PRINTS P-type cation-transporting ATPase superfamily signature 120 132 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele23g1176 Lele-ChrLele23 17284225 17287991 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele23g1176 1 358 Primary Pumps ATPases AT5G57110 76.111 0.0 561