Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele23g1121 ATGGACTCATCTTCTCACAACTGGCTCGCTTTCTCTCTCTCCAATCAGGCCTCTCTTTTCCATTCATTCTCCTCTCCTCCCTCAGGGAGCATCGTCGATGCCTCGCCGGAGGCCGCTGTCGGAGGAGGTGCAACCAGCAACGACCTCTCCGTCTTCGCCGGAGGCGGCCCCAAGTTCGAGGACTTCCTTGGAGGCGGGTCCTCCGCTACGTCGGTCACAGCTGCAGTGCCCACGCCACCTGCTCCTCATCTGTTCTCCACCGACAACGTGTTCGGTTCTGAGCTCAAAACCATAGCCGCCGGCTTCGTCCCCGGCTTGGCCGTCGCTGAACAGGCCCAGCAGCGAAAACAGGCACTGGCTCTCGCCGTGCCGTCCTCTAAGAAGACTGCGGACACCTTCGGCCAACGCAGCTCCATCTACCGCGGCGTAACTCGGCATAGATGGACGGGGAGATATGAAGCTCATCTATGGGATAATAGTTGCAGGAGAGAAGGTCAAGGCAGGAAAGGAAGGCAAGGTGGTTACGATAAGGAAGAGAAAGCAGCGAGAGCTTATGATCTTGCTGCTCTCAAATATTGGGGTCCAACGACAACCACCAACTTTCCAATTTCGAACTATGAGAGGGAACTGGAAGAGATGAAGAACATGACAAGACAAGAATTTGTTGCTTCACTACGAAGGAAGAGTAGTGGTTTCTCTCGAGGAGCCTCCATATACAGAGGAGTGACCAGGCACCACCAGCATGGGCGATGGCAAGCAAGAATTGGCAGAGTTGCCGGAAATAAAGACCTTTATCTCGGCACTTTTAGTACACAAGAAGAAGCTGCTGAAGCATACGATATAGCAGCCATAAAATTTAGAGGACTAAGTGCAGTTACCAACTTCGACATGAGCCGATACGACGTGAAGAGCATTGCCAACAGCAGTCTTCCCGTAGGAGGATTCTCATCCAAAGCCAAGAACTCATCAGATACTTCTGCGTCAGACACCAAAAGCAACGAAGGAAGCCAATCAGCCGACCGAGAGTCCTCTGCGGCGACCTTCGCCTCCCAACCACCCTCGACCTCGAACCTCAGCTTCGCCATACCCATCATGAAACAAGACCCAACCATTGATTACTGGTCCTATATCTTGGGATACCATCAGAACCCTGCATCTTATCTCAGAAACACTTCCAACAACAATGTTACCATCGCCTCTCATTTGCAAAGCTACAACAACAACAACAACAACAATAATAACAACACAACGGTACCGTTCAGCTTGGAGTTGCAGAGAAATAACAACAACAACAACAACGCATTTATGGATGGGAGTGTGATTGTTCAGAACATTCAGCAGCAACAACAAAGTGGAAGCAATAATAACAACAATAACAAAAGTAGTGGAACAGTGGAATCAAGTTCAAGTTCAGTGATCCCAATGGCGACAGCGATGGGTATAAATAATAGTAACGGTAGTTATGAGAGCGATTCTGGATATGGAAACTGGAGCATAGGGAGTGGTCTTCACACATTCCAAACACATGCAAAAGGAAGTCTCTTTCAAACGCCAATATTTGGGGTGGAATGA 1572 0.4955 MDSSSHNWLAFSLSNQASLFHSFSSPPSGSIVDASPEAAVGGGATSNDLSVFAGGGPKFEDFLGGGSSATSVTAAVPTPPAPHLFSTDNVFGSELKTIAAGFVPGLAVAEQAQQRKQALALAVPSSKKTADTFGQRSSIYRGVTRHRWTGRYEAHLWDNSCRREGQGRKGRQGGYDKEEKAARAYDLAALKYWGPTTTTNFPISNYERELEEMKNMTRQEFVASLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGLSAVTNFDMSRYDVKSIANSSLPVGGFSSKAKNSSDTSASDTKSNEGSQSADRESSAATFASQPPSTSNLSFAIPIMKQDPTIDYWSYILGYHQNPASYLRNTSNNNVTIASHLQSYNNNNNNNNNNTTVPFSLELQRNNNNNNNAFMDGSVIVQNIQQQQQSGSNNNNNNKSSGTVESSSSSVIPMATAMGINNSNGSYESDSGYGNWSIGSGLHTFQTHAKGSLFQTPIFGVE 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele23g1121 523 SMART rav1_2 238 302 IPR001471 GO:0003700|GO:0006355
Lele23g1121 523 SMART rav1_2 139 208 IPR001471 GO:0003700|GO:0006355
Lele23g1121 523 MobiDBLite consensus disorder prediction 446 470 - -
Lele23g1121 523 FunFam AP2-like ethylene-responsive transcription factor 237 298 - -
Lele23g1121 523 CDD AP2 138 204 IPR001471 GO:0003700|GO:0006355
Lele23g1121 523 SUPERFAMILY DNA-binding domain 138 204 IPR016177 GO:0003677
Lele23g1121 523 SUPERFAMILY DNA-binding domain 237 298 IPR016177 GO:0003677
Lele23g1121 523 Pfam AP2 domain 139 194 IPR001471 GO:0003700|GO:0006355
Lele23g1121 523 Pfam AP2 domain 238 288 IPR001471 GO:0003700|GO:0006355
Lele23g1121 523 ProSiteProfiles AP2/ERF domain profile. 238 296 IPR001471 GO:0003700|GO:0006355
Lele23g1121 523 CDD AP2 237 298 IPR001471 GO:0003700|GO:0006355
Lele23g1121 523 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 106 413 - -
Lele23g1121 523 Gene3D AP2/ERF domain 139 204 IPR036955 GO:0003700|GO:0006355
Lele23g1121 523 Gene3D AP2/ERF domain 238 298 IPR036955 GO:0003700|GO:0006355
Lele23g1121 523 MobiDBLite consensus disorder prediction 315 355 - -
Lele23g1121 523 FunFam AP2-like ethylene-responsive transcription factor ANT 138 204 - -
Lele23g1121 523 ProSiteProfiles AP2/ERF domain profile. 139 202 IPR001471 GO:0003700|GO:0006355
Lele23g1121 523 PRINTS Ethylene responsive element binding protein signature 278 298 IPR001471 GO:0003700|GO:0006355
Lele23g1121 523 PRINTS Ethylene responsive element binding protein signature 140 151 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele23g1121 Lele-ChrLele23 16735000 16737932 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele23g1121 80 523 AP2-EREBP Transcription Factor Family AT5G57390 53.579 8.00e-143 417
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Lele23g1121 AP2 1.4e-09 CL0081