Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele23g1109 ATGTTTGTACACTTGTACGTCATAAACGAAATCTATCGATTGCAGCCAAGGTCATCTGGTAAAGTCATGGATACAGATGAGGAGTTGTCAATTGTTCTCGAACTATCTAAAGATGACTTTTTCTTTGATAAAAAGGAGAAATTACTTCGAAGTAAAGGTTTTAGTTCCAAGGAACGAGTGTGTCTCCAGAGCTCTTCAAAGCCAGGTTGGATGAGTGATTCTGTGAAAGTACTGGTTCAGATTGCAAGAATCATACATTTGAATGAGGTGGAGCTTTATTTTGCTGATGATGCAAGTATATCAGGGGAATTTTGCAGCCCTAGGAATGAGTTAGAGGCTCTCAATTACATCATTTCACTCCTTGACACGTTACTTTCTAGTTGTAAGCATCCTTACACAAATATACTGCAAGAGTTGCGGACAACAATTCTTGCCTTAATTTCTGATTTTGGGGACAAGAACAGTTTGGGAGCAATAGTCGAAAAGCTTAGATGTGAACAAGAAGAACACCTGTTAGAATGGGGTAAAAGCAATGGTGTAAGGACACAATTACAGATAGCATATGTCAAAGGAGCTGGTCGAGGTGCCATAGCTGAAAAAGATCTTAAAGTTGGAGATGTTGCTCTAGAAATTCCAGTATCCATTATCATCAATGAGGAGCTTGTGCGTGAAACTGATATGTACTGTGTCCTCAAGGAAGTTGAAGGTATATCATCTGAGACAATATTGCTATTATGGAGCATGAAAGAGAAGCACAATCAGGATTCAAGATTCAGAATTTACTTTGACTCACTCCCAGTAACATTTAATACCGGGTTGAGCTTTGGTATTGATGCAATCACAACATCAGAAGGAACCTTGCTCTTGGAAGAGATAATGGAAGCAAGGGAGCACCTTCATGCTCAGTATGATCAATTATTCCCTACCTTGTGCAATGCTTTTCCTGATATATTTCCACCAAAGCTGTTCACGTGGGAGGAATTTCTATGGGCCTGTGAACTCTGGTACTCAAATAGTATGAAGATAATGTTTTCTGATGGAACTTTAAGGACTTGTTTAATTCCGATTGCTGGATTTCTTAATCATTCGCTGTGCCCACACATTCTGCTTTATGGCAAAGTAGATCCTGCAACAAATTCATTGAAATTTCCTCTTTCAAGACCCTGCAGATCTGGAGAAGAATGCTGTTTAAGCTATGGGAACTTCTCTAATTCTCATTTCATTACCTTTTATGGTTTCTTGCCACAAGGAGACAACCCATACAACGTCGTCCCACTTGACATTGATGCTTCTGGCATTGATTCTATGGAGGATGAACCGTCGTCCAGCTGGACCAATCACATGGTGCGGGGTACTTGGCTCTCCAACAACCACAATTTGTACTACTATGGCCTCCCCTCCCCATTGTTGGACTATTTTCGAAGATCTCGAGATCCCATGTTGCATACTAAGACCTTTTTGCAAGGGGACTTGGAAAATGAGCTGGAAATGCTAGAAGATCTCAGATTTATCTTCGAAAGCATGATGGACAATTTGGATGACACAAGTCTTGATGACAGAGAAAACTGCAGTTGGGGTGAAAAATTGGCAGTGGAGTATAAAATTCAACAAAGACGAATTGTCTCCTCTATCTCAACTTCATGTAATACTGGTATCGATATGGTAAAGAATGAACTGTGCAAGTGCATGGCTGAGGACATCCGAGGTTTTGATCTCTGGCAAAAGGATGCTTTCTTCTCCGCGGCCGAGGAGGTCCAGGAATCAGCTGATAGAATGGAATCCACATACAGGGCATGGCTAAGAGAGAAGAGAGAACTGACCCAGTACTTAGATGAACTATGTAGGGAGCTACAAACTGCTTTGGGTACTGCGAAATGGCAGTTGGAAGAGTTTGAGAAGGCTGTCAAGCTAAGCTGCAGGCATCTTGATGATGAGAATGCAACCACTAGGCATAGACAGTTTATTTCGGCCATTGAAAACCAAATTTCCCATGTTGAAGCAGCATTAAGAGAATCTTTTATTGAGGAAGGAAGACAATCCTTCCGCTGGGTTAATCTGGATGAAGAAGATCAGGATGATTTCGCTGCATTTTTGTCTGGAACCTCTCAAATCATGCAGGGTGCTAAGGATGAATGCATAGAACTCACTCCTTCCATGAAAAATACACTTACGGAGAAACAGATCAACAAGAAAGACAAAGTCTTTGATGTAAATGCTTCGTGCAATGGAAATATCTTTAGCGGCAAAAAAGCAACAAAGGATTCCATTTCCATCAACAAGGATGTAAAGTACATTATAGAAATAAAAACAGATGAAGTTTCTGGAACTAGTGATGATATAGTTTCTCAAGCAGGCACAACAACTAATATAAGGAAGACATATAGTTCTCCAAAATTTGGGGAGTTAAAAATCATGATTGCTGATGAAGATGAACAGAGAAATAAACTCATCCATGCTACTGATGGAAACTCTAAAGGAAAAGGGTTCAAATCTGGCTTCTGGAAACATAAATTTGAAGAATATCCTCAGGCAATGCGGGCAGTACATATGTTCAATCAGTTTTTTGGTCGTATTGGTTGTTTCCAAGGACAATTCAATAGTTCCCTACAGTTGCGATCCCACTGTTCTGTTTCAATTATGCTTGCTCTAATGCTTATCATGTTTCTCATCGTTCCCTTTGTGCTTTATTCAACTTGA 2697 0.4016 MFVHLYVINEIYRLQPRSSGKVMDTDEELSIVLELSKDDFFFDKKEKLLRSKGFSSKERVCLQSSSKPGWMSDSVKVLVQIARIIHLNEVELYFADDASISGEFCSPRNELEALNYIISLLDTLLSSCKHPYTNILQELRTTILALISDFGDKNSLGAIVEKLRCEQEEHLLEWGKSNGVRTQLQIAYVKGAGRGAIAEKDLKVGDVALEIPVSIIINEELVRETDMYCVLKEVEGISSETILLLWSMKEKHNQDSRFRIYFDSLPVTFNTGLSFGIDAITTSEGTLLLEEIMEAREHLHAQYDQLFPTLCNAFPDIFPPKLFTWEEFLWACELWYSNSMKIMFSDGTLRTCLIPIAGFLNHSLCPHILLYGKVDPATNSLKFPLSRPCRSGEECCLSYGNFSNSHFITFYGFLPQGDNPYNVVPLDIDASGIDSMEDEPSSSWTNHMVRGTWLSNNHNLYYYGLPSPLLDYFRRSRDPMLHTKTFLQGDLENELEMLEDLRFIFESMMDNLDDTSLDDRENCSWGEKLAVEYKIQQRRIVSSISTSCNTGIDMVKNELCKCMAEDIRGFDLWQKDAFFSAAEEVQESADRMESTYRAWLREKRELTQYLDELCRELQTALGTAKWQLEEFEKAVKLSCRHLDDENATTRHRQFISAIENQISHVEAALRESFIEEGRQSFRWVNLDEEDQDDFAAFLSGTSQIMQGAKDECIELTPSMKNTLTEKQINKKDKVFDVNASCNGNIFSGKKATKDSISINKDVKYIIEIKTDEVSGTSDDIVSQAGTTTNIRKTYSSPKFGELKIMIADEDEQRNKLIHATDGNSKGKGFKSGFWKHKFEEYPQAMRAVHMFNQFFGRIGCFQGQFNSSLQLRSHCSVSIMLALMLIMFLIVPFVLYST 898
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele23g1109 898 CDD SET_LSMT 184 414 - -
Lele23g1109 898 Pfam Rubisco LSMT substrate-binding 37 129 IPR015353 -
Lele23g1109 898 ProSiteProfiles SET domain profile. 182 400 IPR001214 GO:0005515
Lele23g1109 898 SUPERFAMILY SET domain 168 421 IPR046341 -
Lele23g1109 898 Gene3D - 573 673 - -
Lele23g1109 898 Pfam SET domain 193 400 IPR001214 GO:0005515
Lele23g1109 898 FunFam Syntaxin 10 573 672 - -
Lele23g1109 898 Gene3D set domain protein methyltransferase, domain 1 165 414 - -
Lele23g1109 898 FunFam Transcription factor, E2F and DP-related 166 414 - -
Lele23g1109 898 Pfam Syntaxin 6, N-terminal 576 666 IPR015260 GO:0016020|GO:0048193
Lele23g1109 898 Gene3D - 24 148 IPR036464 -
Lele23g1109 898 PANTHER OS05G0443700 PROTEIN 568 889 - -
Lele23g1109 898 SUPERFAMILY t-snare proteins 575 670 IPR010989 GO:0016020|GO:0016192
Lele23g1109 898 Coils Coil 582 602 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele23g1109 Lele-ChrLele23 16645872 16654643 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Lele23g1109 SET 1.1e-05 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele23g1109 23 16645872 16654643 Lele23g1109 23 16645872 16654643 ECH
Lele21g0941 21 6473931 6479005 Lele23g1109 23 16645872 16654643 hybridization