Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele23g1090 ATGGGAATTGAGAGAGGAGGCCTTAAGGGCTTACGTGGCGGGTGGAGCGTCGCCGCCAAGCCGTGCGACTCCTGCAAATCTGCGGCTTCCGCCGTGTTCTGCCGTGCTGATTCCGCCTCCCTCTGCATGGCCTGTGACTCCCGAATTCACTGCGGTAATAAGCTCGCTTCCCGCCACGAGCGTGTTTGGATGTGCGAGGTTTGTGAGCAGGCCCCTGCTTCCGTCACGTGCAAGGCCGACGCCGCCGCTCTCTGTGTCACCTGCGATTCCGACATCCACTCCGCCAACCCACTTGCTCGCCGCCACGAGCGCGTCCCGGTGGAGCCCTTTTATGACTCTGCTGAGTTGGTGGCGAAATCCTCTTCCGCCGTTGCTGCTTTCAACTTCTTCGTCCCCAGCGACAACGGGATTTGCTCCGACGGGTTCCAAACCGACGATCCCGAACCAGTTCCGTGGATGGTTCCCAACCAGAATTTCAATTCCAAGGTCGTGGGTGCTCCGGAAGTCAAGTCCGGCGACATGTTCTTCACGGAAATGGATCCGTTTATGGATTTCGATTACTCCAATTCTTATCAGAATAATAACAATCACGGCGCGGCAAACGACAGCGTTGTGCCGGTTCAAAACAAACCTGTTACGGCGCCGATGATCAATCACTCGGAGAGTTGCTTCGATATTGATTTTTGCAGATCGAAGCTTTCTTCTTTTAGTAGCTACCCAAGCCAAAGTGTTTCGACGTCCTCGCTTGATGTTGGGGTTGTACCAGACTCAGTGTCAGAAATGTCGTTCTCCTTGGGGCGAAACATGAGCAACAGCTCCGAATCCGGCGGAATCGGGTCTGCGGGTAACAACCAGGCGACCCAACTGGGCGGGATGGACCGGGAAGCGAGGGTGTTGAGGTACAGAGAGAAAAGGAAGAACCGGAAGTTCGAGAAGACCATCCGATACGCTTCGAGGAAAGCATACGCGGAGACCCGACCCAGGATCAAGGGTCGGTTCGCTAAACGGAGCGAAACCGAGTCGGAGGTAGACCGGGTATACAGCCCCGTCAGCTCGGGGGGTCTGATGATGGACGCTCAGTACGGCGTCGTACCATCGTTTTAA 1104 0.5598 MGIERGGLKGLRGGWSVAAKPCDSCKSAASAVFCRADSASLCMACDSRIHCGNKLASRHERVWMCEVCEQAPASVTCKADAAALCVTCDSDIHSANPLARRHERVPVEPFYDSAELVAKSSSAVAAFNFFVPSDNGICSDGFQTDDPEPVPWMVPNQNFNSKVVGAPEVKSGDMFFTEMDPFMDFDYSNSYQNNNNHGAANDSVVPVQNKPVTAPMINHSESCFDIDFCRSKLSSFSSYPSQSVSTSSLDVGVVPDSVSEMSFSLGRNMSNSSESGGIGSAGNNQATQLGGMDREARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRSETESEVDRVYSPVSSGGLMMDAQYGVVPSF 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele23g1090 367 ProSiteProfiles CCT domain profile. 294 336 IPR010402 GO:0005515
Lele23g1090 367 Pfam B-box zinc finger 62 107 IPR000315 GO:0008270
Lele23g1090 367 SMART bboxneu5 65 107 IPR000315 GO:0008270
Lele23g1090 367 SMART bboxneu5 17 64 IPR000315 GO:0008270
Lele23g1090 367 MobiDBLite consensus disorder prediction 265 290 - -
Lele23g1090 367 MobiDBLite consensus disorder prediction 265 295 - -
Lele23g1090 367 CDD Bbox1_BBX-like 21 64 - -
Lele23g1090 367 CDD Bbox1_BBX-like 65 107 - -
Lele23g1090 367 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 21 348 IPR045281 GO:0009909
Lele23g1090 367 Pfam CCT motif 294 336 IPR010402 GO:0005515
Lele23g1090 367 ProSiteProfiles Zinc finger B-box type profile. 17 64 IPR000315 GO:0008270
Lele23g1090 367 ProSiteProfiles Zinc finger B-box type profile. 60 107 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele23g1090 Lele-ChrLele23 16454841 16456066 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele23g1090 1 367 C2C2-CO-like Transcription Factor Family AT5G57660 53.826 2.47e-122 355
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Lele23g1090 zf-B_box 4.4e-07 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele23g1090 23 16454841 16456066 Lele23g1090 23 16454841 16456066 ECH
Lele21g0962 21 6697909 6699870 Lele23g1090 23 16454841 16456066 hybridization
Lele22g0967 22 6760881 6762117 Lele23g1090 23 16454841 16456066 hybridization