Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele23g1089 ATGATGCTTTCTTCTTCTTCTTCTTCACCTAGTAAAATACTTATCGGTCTTCCTTTAGACCCAGATGATAGCAGAGAACTTCTCTCGTGGGCAATTCGAGTTCTTGCCAATCCAAATGACACCATTGTAGCACTCCATGTTCTTGTTTCTAAGGATAGGAGGAAGAGGAAGAAGAAGAGTGCTTCAATGACAAGAAGGCAATTGCAACTTCGACAGGCTAAAGCTTATGTCATATCTGTGCTTGGTGAATTTGCAAAAACGTGTTGGTCTAAGCAGGTGAATCTGGAAGCTAAAGTGGCATTTAGTTCCAATGTAGGTGGAGGTTTAGTTGCAGAAGCCAAGACCATATCTGCTGACTTTCTTCTTCTTCTTGGCTCAAGAAACAAGTCTAACAAGAATCAGGTCTCTGATGGAATTACCAAGTTCTGCTTTGAGAATGTTCATGAAAGCTGCACTGTTATCTCAGTTGGTAAAAGTTCCAAATGCGGTTTTACAAATTCTCAAGATAATTATGAATCAAGTTCAGGGTGGTTTAAGGAGGATAAGCAGAGCAGTAACAGGGGACCATCCCCTGTTTTGAAGGCTTTTACTCAAACACGTTCACCAAGAACAGTTTTGGAGGCACTTGAGGGTCAATCTAACAGCACAGAAGATGATAATACGTTTAGCACAAGGGTTTCAAGCATCACAGACACTCCTTCAACAGGTTCTAATAAAATGAAAAGCCAATCCAATGATTTAAGGAAACCACCACAGTCCCCATTCAGATTCATAGCCTCACTTATTGCCTCACCATTATTATTAAGAAGGAAGAACTCCAAAAAGTCCCAAAATGAAAAGAGACAACCCTTGTTGAAATGCTTCAGCTATGAAGAAATCTCCAACGCCACAAGTGGCTTCCACCAAGAGAATTTGGTGGGACGAGGTGGGTACTCTGAAGTATACAGAGGAGATCTTTCTGATGGACAAACCATTGCAGTGAAAAGGTTGTCCAAGGACAACAAGGATGCTAACAAGGAAAAGGAGTTCCTCATGGAACTAGGAGTCATCGGACATGTCTGTCATCCTAATACTGCATCTTTAGTTGGATGCTGCATTGAAAATGGACTCTATCTGATTTTCAAGTACTCTCAAAATGGAAACTTGGCCACTGCATTGCATGGTAAATCAGCAACGTCACTTGATTGGCCAGTGAGATACAGAATCGCCATTGGAGTAGCAAGGGGGCTGCATTATCTTCACAAGTGTTGCAAACGCAGAATAATTCATCGTGACATTAAAGCCTCCAATGTGCTTCTTGGTCCAGATTATGAACCACAGATTACTGATTTTGGGCTAGCAAAGTGGCTTCCAAACAAGTGGACTCATCGTGCTGTAATACCAGTGGAAGGCACGTTTGGGTATTTGGCACCAGAATCCTTCATGCATGGAATAGTGGATGAGAAAACTGATGTTTATGCTTTTGGGATTCTACTTCTGGAGATTATAACTGGAAGAAGACCTATTGATTCCAAGAAACAGAATCTTCTCCTCTGGGCAAGGCCTCTGATGGAATCAGGGAACATTAGGGAGATAGCTGATCCAAGAATGGAAGGCGTATACGATGAAGATGAATTGAAGAGAGTAGTAATCACAGCCTCATACTGTGTGAGACAATCTCCTCTTTGGCGTCCCCCGATGAGCGAGGTGTTGGAGCTGCTAACCAGAGGAGAAGAGAGCGAAGCTGGGAATAGTTGGAGGATTCCAAAGTTCACATCTGATGAATTGGATGATTATTCTATGGCTTTTGGATATGAACTGCCTTCTGATATATCTCTTGAGGACTTTTTGTGA 1833 0.4212 MMLSSSSSSPSKILIGLPLDPDDSRELLSWAIRVLANPNDTIVALHVLVSKDRRKRKKKSASMTRRQLQLRQAKAYVISVLGEFAKTCWSKQVNLEAKVAFSSNVGGGLVAEAKTISADFLLLLGSRNKSNKNQVSDGITKFCFENVHESCTVISVGKSSKCGFTNSQDNYESSSGWFKEDKQSSNRGPSPVLKAFTQTRSPRTVLEALEGQSNSTEDDNTFSTRVSSITDTPSTGSNKMKSQSNDLRKPPQSPFRFIASLIASPLLLRRKNSKKSQNEKRQPLLKCFSYEEISNATSGFHQENLVGRGGYSEVYRGDLSDGQTIAVKRLSKDNKDANKEKEFLMELGVIGHVCHPNTASLVGCCIENGLYLIFKYSQNGNLATALHGKSATSLDWPVRYRIAIGVARGLHYLHKCCKRRIIHRDIKASNVLLGPDYEPQITDFGLAKWLPNKWTHRAVIPVEGTFGYLAPESFMHGIVDEKTDVYAFGILLLEIITGRRPIDSKKQNLLLWARPLMESGNIREIADPRMEGVYDEDELKRVVITASYCVRQSPLWRPPMSEVLELLTRGEESEAGNSWRIPKFTSDELDDYSMAFGYELPSDISLEDFL 610
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele23g1089 610 CDD USP_Like 12 127 - -
Lele23g1089 610 ProSitePatterns Serine/Threonine protein kinases active-site signature. 421 433 IPR008271 GO:0004672|GO:0006468
Lele23g1089 610 MobiDBLite consensus disorder prediction 170 250 - -
Lele23g1089 610 FunFam Putative receptor-like serine/threonine-protein kinase 268 376 - -
Lele23g1089 610 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 10 130 - -
Lele23g1089 610 Gene3D HUPs 3 155 IPR014729 -
Lele23g1089 610 PANTHER OS08G0249100 PROTEIN 68 580 - -
Lele23g1089 610 ProSiteProfiles Protein kinase domain profile. 300 580 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele23g1089 610 ProSitePatterns Protein kinases ATP-binding region signature. 306 328 IPR017441 GO:0005524
Lele23g1089 610 Pfam Protein tyrosine and serine/threonine kinase 302 511 IPR001245 GO:0004672|GO:0006468
Lele23g1089 610 Gene3D Transferase(Phosphotransferase) domain 1 378 583 - -
Lele23g1089 610 MobiDBLite consensus disorder prediction 170 252 - -
Lele23g1089 610 FunFam Probable receptor-like serine/threonine-protein kinase At5g57670 377 581 - -
Lele23g1089 610 Coils Coil 327 347 - -
Lele23g1089 610 Gene3D Phosphorylase Kinase; domain 1 262 376 - -
Lele23g1089 610 SMART serkin_6 300 567 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele23g1089 610 SUPERFAMILY Protein kinase-like (PK-like) 276 567 IPR011009 -
Lele23g1089 610 Pfam Universal stress protein family 17 134 IPR006016 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele23g1089 Lele-ChrLele23 16443064 16447211 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele23g1089 288 606 Trihelix Transcription Factor Family AT1G70460 40.653 6.37e-75 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Lele23g1089 PK_Tyr_Ser-Thr 2.8e-41 CL0016