Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele23g1088 ATGGGATCCAACCTCAGTTGCTGTGGTTCAGACAAGGTCGAAGAAGTGCCAGGATCTGGTAGTGTGGCGAACAACAATTCATGGAGAATATTCAAATACAAGGAGTTGCATGCGGCTACCAATGGTTTCAGTGAGGATTGTAAACTTGGTGAAGGTGGCTTTGGAAGTGTCTACTGGGGAAAAACCACTGATGGTCTCCAGATAGCAGTGAAGAAACTGAAAGCAATGAATTCAAAGGCAGAGATGGAATTCGCAGTAGAAGTAGAAGTTCTGGGAAGGGTAAGGCACAAGAATTTGCTTGGCCTCAGAGGTTACTGCGCCGGCGACGAACAACGACTCATAGTTTATGATTACATGCCAAATCTCAGCCTTCTCTCTCACCTCCATGGCCAATTCGCTGCCGAAGTCCAGCTCGATTGGAAAAGAAGAATGAACATCGCCATCGGCTCAGCTCAAGGCCTATTGTACTTGCATCACGAGGTAACGCCTCATATAATCCACAGAGATATAAAGGCAAGCAATGTTCTGTTAAACTCAGACTTTGAGCCACTGGTTGCTGATTTTGGGTTTGCGAAGCTAATCCCAGAAGGGGTAAGCCACCTAACGACCCGAGTGAAGGGCACTTTGGGGTACTTAGCTCCTGAGTACGCCATGTGGGGCAAGGTCTCTGAAAGCTGCGATGTTTATAGCTTTGGGATTCTTCTGCTAGAGTTAGTCACAGGAAGAAAGCCCATAGAGAAGCTACCAGGAGGGCTAAAGAGAACCATAACTGAGTGGGCTGAACCATTCATAAGCAAAGGCAAGTTCAGAGAAATGGTGGATCGAAGACTTCGAGGGAACTTCGATGAGAGACAAGTGGAACAGATGATCAATGTGGCTTCTCTTTGTGTTCAAAGTGAGCCTGAGAAACGACCAAACATGAAGCAAGTGGTTAATCTGTTAAAAGGGTATGAAGCAGATCATGGGATGGTGATGAAGACGAGGATAGATAGTATTAAGTATAATGAACAACTTATGGAGCTTGATCAGAAAAGCGATGATGAAGATGATGAAACCAATGGTCATTACGGTGTTTTTAGTGCTCTTGAGGTTCAAAAGATACACGATCCTTACAAGCAACGCCATGGTGATGCAAAAATGGCGAAACCAATTTGA 1155 0.4511 MGSNLSCCGSDKVEEVPGSGSVANNNSWRIFKYKELHAATNGFSEDCKLGEGGFGSVYWGKTTDGLQIAVKKLKAMNSKAEMEFAVEVEVLGRVRHKNLLGLRGYCAGDEQRLIVYDYMPNLSLLSHLHGQFAAEVQLDWKRRMNIAIGSAQGLLYLHHEVTPHIIHRDIKASNVLLNSDFEPLVADFGFAKLIPEGVSHLTTRVKGTLGYLAPEYAMWGKVSESCDVYSFGILLLELVTGRKPIEKLPGGLKRTITEWAEPFISKGKFREMVDRRLRGNFDERQVEQMINVASLCVQSEPEKRPNMKQVVNLLKGYEADHGMVMKTRIDSIKYNEQLMELDQKSDDEDDETNGHYGVFSALEVQKIHDPYKQRHGDAKMAKPI 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele23g1088 384 FunFam PTI1-like tyrosine-protein kinase At3g15890 119 332 - -
Lele23g1088 384 ProSitePatterns Serine/Threonine protein kinases active-site signature. 165 177 IPR008271 GO:0004672|GO:0006468
Lele23g1088 384 FunFam PTI1-like tyrosine-protein kinase At3g15890 18 118 - -
Lele23g1088 384 PANTHER OS01G0253100 PROTEIN 24 319 IPR045271 -
Lele23g1088 384 Gene3D Phosphorylase Kinase; domain 1 18 118 - -
Lele23g1088 384 SUPERFAMILY Protein kinase-like (PK-like) 23 314 IPR011009 -
Lele23g1088 384 ProSiteProfiles Protein kinase domain profile. 43 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele23g1088 384 Gene3D Transferase(Phosphotransferase) domain 1 119 331 - -
Lele23g1088 384 Pfam Protein tyrosine and serine/threonine kinase 47 314 IPR001245 GO:0004672|GO:0006468
Lele23g1088 384 CDD STKc_IRAK 49 316 - -
Lele23g1088 384 SMART serkin_6 43 314 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele23g1088 384 ProSitePatterns Protein kinases ATP-binding region signature. 49 72 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele23g1088 Lele-ChrLele23 16433787 16435722 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele23g1088 2 353 Trihelix Transcription Factor Family AT1G70460 44.628 3.68e-96 300
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XV Lele23g1088 PK_Tyr_Ser-Thr 2.1e-44 CL0016